# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	0.4173		
1d0yA	761	1.133	b.34.3.1,c.37.1.9	24581,32178
1lvk	762	2.159		
3bzcA	785	3.223		
1mvwA	840	3.481	i.15.1.1	79523
2nn6H	308	3.535		
1w9iA	770	3.884		
1y14B	171	4.113	b.40.4.5,d.230.1.1	116323,116324
2akaA	776	5.593		
1q46A	175	8.522	a.60.14.1,b.40.4.5	111594,111595
1vk3A	615	14.04	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
3c8iA	141	14.05		
2vknA	70	14.72		
2j58A	359	17.60		
1go3E	187	22.53	b.40.4.5,d.230.1.1	83054,83055
1a0nB	69	24.84	b.34.2.1	24469
1u06A	62	26.36	b.34.2.1	119404
3cp0A	82	26.51		
1at0	145	26.59		
2bz8A	58	27.06		
1hd3A	62	28.36	b.34.2.1	65802
2drmA	58	29.54		
1qdlA	422	30.44	d.161.1.1	42088
2g6fX	59	30.49		
1yn8A	59	31.37		
3c0cA	73	31.68		
1zlmA	58	32.41		
1x2kA	68	34.16		
2ba1A	179	34.24		
1bkb	136	34.70		
1lvlA	458	36.20	c.3.1.5,c.3.1.5,d.87.1.1	30567,30568,40205
1aisA	182	36.22	d.129.1.1,d.129.1.1	41288,41289
2vacA	134	37.50		
2iimA	62	39.61	b.34.2.1	137434
2hdaA	64	40.29		
2ak5A	64	40.47		
1zeqX	84	41.20		
1zx6A	58	42.50		
2gncA	60	43.65		
1yz8P	68	44.19	a.4.1.1	124270
1tg0A	68	44.40		
2j6fA	62	45.65		
2hs3A	603	46.27	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
1at0A	145	46.87	b.86.1.1	28374
1wdxA	69	46.90		
1y0mA	61	48.15		
2ppyA	265	49.75		
1zuyA	58	51.54		
2bkhA	814	51.93		
2d1xA	66	52.37		
1ckaA	57	53.20	b.34.2.1	24459
1xcbA	211	55.89	a.4.5.38,c.2.1.12	109552,109553
1ywpA	64	56.24		
1widA	130	56.27	b.142.1.2	114667
2jgbA	195	56.36		
1t0qC	86	58.46	d.15.12.1	106222
2a28A	54	58.75		
2incC	83	59.06	d.15.12.1	137526
1jggA	60	59.65	a.4.1.1	62950
1w70A	60	60.79		
1ruwA	69	63.01		
2je6I	251	64.33		
2idrA	177	66.23		
1tuc	63	68.41		
2rb9A	334	69.96		
2bzyA	67	70.21		
2bkdN	134	70.38		
2oauA	306	71.66	b.38.1.3,d.58.43.1,f.34.1.1	138978,138979,138980
2f23A	156	71.70	a.2.1.1,d.26.1.2	132797,132798
2d4rA	147	72.12	d.129.3.6	131256
1z9zA	60	73.87		
2ggrA	76	74.75		
1shfA	59	78.83	b.34.2.1	24462
1zmdA	474	81.88		
2fpeA	62	84.27		
1zk7A	467	84.82		
1semA	58	89.80	b.34.2.1	24544