# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	0.2827		
1w9iA	770	0.6999		
1d0yA	761	1.181	b.34.3.1,c.37.1.9	24581,32178
1lvk	762	1.679		
2j58A	359	2.149		
2akaA	776	2.234		
1y14B	171	3.270	b.40.4.5,d.230.1.1	116323,116324
1at0	145	3.536		
1q46A	175	3.889	a.60.14.1,b.40.4.5	111594,111595
1at0A	145	6.160	b.86.1.1	28374
1go3E	187	6.463	b.40.4.5,d.230.1.1	83054,83055
1i40A	175	7.996	b.40.5.1	66024
2idrA	177	8.149		
1tg0A	68	9.594		
1mvwA	840	9.683	i.15.1.1	79523
1zx6A	58	10.31		
3bzcA	785	10.39		
1wdxA	69	13.25		
2ak5A	64	14.35		
2ba1A	179	14.37		
1zeqX	84	14.79		
1w70A	60	14.87		
2iimA	62	15.01	b.34.2.1	137434
1zlmA	58	15.04		
3c0cA	73	16.06		
3c8iA	141	16.12		
1zk7A	467	16.24		
2g6fX	59	18.54		
1yn8A	59	19.09		
2gncA	60	19.28		
2bz8A	58	19.50		
2d1xA	66	20.01		
1u06A	62	21.97	b.34.2.1	119404
1hd3A	62	24.64	b.34.2.1	65802
1lm4A	194	24.65	d.167.1.1	84626
2vknA	70	26.80		
2drmA	58	26.97		
1a0nB	69	27.58	b.34.2.1	24469
1ywpA	64	30.84		
2jgbA	195	31.07		
1y0mA	61	33.95		
2id0A	644	34.03		
1aisA	182	34.78	d.129.1.1,d.129.1.1	41288,41289
1z9zA	60	35.97		
2au7A	175	36.63		
2fpeA	62	36.99		
2bzyA	67	39.00		
2je6I	251	41.48		
2a28A	54	42.62		
2hdaA	64	43.31		
2o9sA	67	43.62		
1utiA	58	44.09	b.34.2.1	99962
1yfnA	118	48.98	b.136.1.1	123080
1gcqA	61	49.05	b.34.2.1	60434
1zuyA	58	50.91		
1semA	58	51.27	b.34.2.1	24544
2o31A	67	51.61		
2chcA	170	52.58		
2nn6H	308	52.93		
1uj0A	62	53.93	b.34.2.1	99449
2bqxA	173	54.12		
1x2kA	68	54.12		
2uubD	209	54.68	d.66.1.2	139935
1tuc	63	56.07		
2bkhA	814	56.08		
2ggrA	76	57.46		
1shfA	59	58.25	b.34.2.1	24462
2j6fA	62	59.05		
1oebA	62	59.10	b.34.2.1	86909
2gy9D	204	59.57		
2ajrA	331	60.05	c.72.1.1	126892
2ja9A	175	60.12		
2vacA	134	60.93		
1zmdA	474	61.92		
1gxcA	149	62.13	b.26.1.2	70687
3c4sA	66	62.20		
1qnaA	200	63.73	d.129.1.1,d.129.1.1	41226,41227
1i76A	163	64.04	d.92.1.11	61877
2vqeD	209	68.81		
1ej1A	190	69.62	d.86.1.1	40144
2hs3A	603	70.01	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
2d4rA	147	70.06	d.129.3.6	131256
1ckaA	57	70.53	b.34.2.1	24459
2arzA	247	72.79	b.45.1.1	127225
1ou8A	111	75.34	b.136.1.1	93543
2ix0A	663	75.39		
2incC	83	76.33	d.15.12.1	137526
1a8vA	121	76.69	a.140.3.1,b.40.4.5	64712,64713
1mp9A	198	77.58	d.129.1.1,d.129.1.1	91385,91386
1jo8A	58	78.88	b.34.2.1	71774
1g97A	459	79.50	b.81.1.4,c.68.1.5	60394,60395
1mi8A	158	82.14	b.86.1.2	91279
2o88A	58	83.34		
1x9iA	302	83.94	c.80.1.1	114997
1qdlA	422	85.18	d.161.1.1	42088
1zuuA	58	85.78	b.34.2.1	125688
1ruwA	69	87.08		
3cp0A	82	87.44		
1kl9A	182	89.68	a.60.14.1,b.40.4.5	111574,111575
2bkdN	134	89.98