# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2a19A 175 0.3270 1at0 145 1.302 2id0A 644 1.842 1y14B 171 1.944 b.40.4.5,d.230.1.1 116323,116324 2j58A 359 2.142 1lvk 762 3.603 1d0yA 761 4.464 b.34.3.1,c.37.1.9 24581,32178 2hi2A 158 4.861 1at0A 145 5.955 b.86.1.1 28374 2akaA 776 6.254 1i40A 175 7.157 b.40.5.1 66024 1zeqX 84 7.220 2tpt 440 7.811 3bcwA 123 7.937 1gxcA 149 8.668 b.26.1.2 70687 1wdxA 69 9.96 1n7hA 381 10.40 c.2.1.2 80250 1w9iA 770 10.58 2gncA 60 10.72 2ak5A 64 12.42 3bzcA 785 12.74 2idrA 177 13.00 1zx6A 58 13.10 2drmA 58 14.74 2d1xA 66 14.85 1zlmA 58 15.05 2bz8A 58 15.14 1o59A 355 15.60 b.18.1.22,b.18.1.22 92495,92496 2rerA 173 15.98 2je6I 251 16.09 2jgbA 195 16.50 1lvlA 458 16.76 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 2g6fX 59 16.80 1u06A 62 17.54 b.34.2.1 119404 1q46A 175 17.55 a.60.14.1,b.40.4.5 111594,111595 3c8iA 141 17.57 2au7A 175 17.63 1w70A 60 17.81 2z06A 252 18.41 1pot 325 18.52 2hqyA 305 20.58 1yfnA 118 20.62 b.136.1.1 123080 2iimA 62 21.23 b.34.2.1 137434 1go3E 187 21.39 b.40.4.5,d.230.1.1 83054,83055 1qdlA 422 21.40 d.161.1.1 42088 2ba1A 179 21.68 1a0nB 69 21.76 b.34.2.1 24469 2r3uA 211 22.16 1hd3A 62 22.27 b.34.2.1 65802 1g97A 459 25.28 b.81.1.4,c.68.1.5 60394,60395 1f1xA 322 25.74 d.32.1.3,d.32.1.3 83208,83209 2hdaA 64 25.82 1ywpA 64 26.42 1aisA 182 27.26 d.129.1.1,d.129.1.1 41288,41289 1y0mA 61 27.28 2dfuA 264 27.50 2vknA 70 28.96 2qcpX 80 29.28 1m7vA 363 29.93 d.174.1.1 78748 1ey4A 149 31.12 b.40.1.1 24815 1v47A 349 31.45 b.122.1.3,c.26.1.5 100292,100293 1woqA 267 31.50 c.55.1.10,c.55.1.10 109462,109463 1a8vA 121 33.56 a.140.3.1,b.40.4.5 64712,64713 3cnyA 301 33.92 1zejA 293 34.67 1x2kA 68 34.78 1zuyA 58 34.80 1v25A 541 35.12 e.23.1.1 108275 2a8kA 108 36.41 d.243.1.2 126404 1z9zA 60 36.52 2a28A 54 39.61 2ja9A 175 39.68 1semA 58 40.07 b.34.2.1 24544 2p8rA 273 40.44 2pi2A 270 41.62 2bkdN 134 42.33 1lm4A 194 42.85 d.167.1.1 84626 1ruwA 69 43.52 2o0uA 364 43.71 d.144.1.7 138868 1utiA 58 44.72 b.34.2.1 99962 1t0qC 86 45.79 d.15.12.1 106222 2j6fA 62 45.90 2sakA 121 46.00 d.15.5.1 37711 2o11A 407 46.79 2bzyA 67 48.20 2hs3A 603 48.66 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 136712,136713,136714,136715 2nn6H 308 50.27 2bqxA 173 50.64 2i2cA 272 51.10 1mvwA 840 51.35 i.15.1.1 79523 2dxnA 274 52.12 1lk9A 448 53.19 c.67.1.1 78057 1ov3A 138 53.23 b.34.2.1,b.34.2.1 87451,87452 1tuc 63 53.23 1gcqA 61 54.20 b.34.2.1 60434 1uirA 314 55.09 c.66.1.17 99429 1mp9A 198 55.83 d.129.1.1,d.129.1.1 91385,91386 2b8mA 117 56.01 b.82.1.18 128092 2p17A 277 56.31 2fpeA 62 59.83 2o0yA 260 60.70 1oebA 62 61.02 b.34.2.1 86909 1shfA 59 61.43 b.34.2.1 24462 1v3yA 192 61.67 d.167.1.1 113508 1qnaA 200 62.69 d.129.1.1,d.129.1.1 41226,41227 1k3rA 268 63.00 b.40.4.10,c.116.1.2 72018,72019 1o7tA 309 63.34 c.94.1.1 86645 1suwA 249 63.77 e.52.1.1 106027 2ggrA 76 64.27 2hhjA 267 66.60 c.60.1.1 136497 1sddA 306 67.72 b.6.1.3,b.6.1.3 105431,105432 2vacA 134 68.39 1tf1A 198 71.60 d.110.2.2 106826 1n9eA 787 72.15 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1u8fO 335 72.90 c.2.1.3,d.81.1.1 119626,119627 1jo8A 58 73.76 b.34.2.1 71774 3b9jB 350 74.05 1ou8A 111 74.11 b.136.1.1 93543 2b78A 385 74.13 b.122.1.9,c.66.1.51 128025,128026 2g9zA 348 75.26 2incC 83 75.73 d.15.12.1 137526 1r5lA 262 78.48 a.5.3.1,c.13.1.1 97099,97100 2qg3A 208 78.97 1edzA 320 79.01 c.2.1.7,c.58.1.2 30287,33935 1yspA 181 79.48 2chcA 170 79.55 1mz4A 137 80.34 a.3.1.1 91496 2epjA 434 80.55 2gjgA 248 80.58 1k8tA 510 83.41 e.41.1.1 68316 1gntA 553 83.68 e.26.1.1 70290 2pjmA 226 84.48 2hbtA 247 84.80 2h17A 181 86.75 3bs1A 103 87.18 2fckA 181 88.94 d.108.1.1 133272 2vqeD 209 88.96 2d4rA 147 89.18 d.129.3.6 131256 1a62A 130 89.28 a.140.3.1,b.40.4.5 64708,64709 1pg5A 299 89.34 c.78.1.1,c.78.1.1 104146,104147 2a08A 60 89.57