# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	0.4680		
1w9iA	770	2.069		
1d0yA	761	3.834	b.34.3.1,c.37.1.9	24581,32178
1y14B	171	4.131	b.40.4.5,d.230.1.1	116323,116324
1lvk	762	4.503		
2akaA	776	5.284		
2j58A	359	5.650		
1at0	145	9.285		
1tg0A	68	9.833		
1zx6A	58	11.63		
1q46A	175	11.91	a.60.14.1,b.40.4.5	111594,111595
1go3E	187	12.44	b.40.4.5,d.230.1.1	83054,83055
2ak5A	64	12.57		
1i40A	175	12.59	b.40.5.1	66024
1mvwA	840	13.48	i.15.1.1	79523
1zlmA	58	14.16		
1wdxA	69	14.55		
1w70A	60	15.11		
2idrA	177	15.11		
1zeqX	84	15.43		
2bz8A	58	15.65		
3c8iA	141	16.07		
1at0A	145	17.68	b.86.1.1	28374
2g6fX	59	18.15		
3c0cA	73	18.35		
2d1xA	66	18.93		
1a0nB	69	19.04	b.34.2.1	24469
2gncA	60	19.84		
1yn8A	59	19.93		
1u06A	62	20.83	b.34.2.1	119404
2iimA	62	21.80	b.34.2.1	137434
1hd3A	62	22.34	b.34.2.1	65802
2drmA	58	25.76		
2ba1A	179	28.13		
3bzcA	785	28.91		
1ywpA	64	29.68		
1qdlA	422	30.16	d.161.1.1	42088
2hdaA	64	30.58		
1y0mA	61	32.28		
2jgbA	195	33.55		
1zk7A	467	35.44		
2au7A	175	37.09		
1gxcA	149	37.42	b.26.1.2	70687
2vknA	70	38.72		
1lm4A	194	39.03	d.167.1.1	84626
1aisA	182	39.71	d.129.1.1,d.129.1.1	41288,41289
2a28A	54	44.22		
1semA	58	44.82	b.34.2.1	24544
2bzyA	67	47.04		
2fpeA	62	48.32		
2incC	83	53.53	d.15.12.1	137526
2uubD	209	53.73	d.66.1.2	139935
1x2kA	68	54.08		
1i76A	163	54.28	d.92.1.11	61877
1z9zA	60	54.78		
1mp9A	198	55.03	d.129.1.1,d.129.1.1	91385,91386
1utiA	58	56.48	b.34.2.1	99962
1g97A	459	56.48	b.81.1.4,c.68.1.5	60394,60395
1tuc	63	56.87		
2j6fA	62	57.45		
2pi2A	270	59.87		
1qnaA	200	60.66	d.129.1.1,d.129.1.1	41226,41227
1zuyA	58	62.73		
1oebA	62	63.27	b.34.2.1	86909
2nn6H	308	65.71		
2gy9D	204	66.25		
2vqeD	209	67.15		
1jo8A	58	67.60	b.34.2.1	71774
2ggrA	76	68.32		
2fckA	181	70.43	d.108.1.1	133272
2z30B	65	70.63		
2d4rA	147	73.13	d.129.3.6	131256
1uj0A	62	74.39	b.34.2.1	99449
1yfnA	118	77.73	b.136.1.1	123080
2hddA	61	80.50	a.4.1.1	15971
2o9sA	67	80.59		
1shfA	59	81.30	b.34.2.1	24462
2ajrA	331	84.04	c.72.1.1	126892
2bkdN	134	84.06		
1tzjA	338	84.67	c.79.1.1	112868
1gcqA	61	85.03	b.34.2.1	60434
1ruwA	69	85.76		
1ej1A	190	86.45	d.86.1.1	40144
1ckaA	57	86.63	b.34.2.1	24459
2chcA	170	86.77		
2rerA	173	86.80		
2o31A	67	88.55