# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	0.3045		
1q46A	175	3.920	a.60.14.1,b.40.4.5	111594,111595
1w9iA	770	4.140		
2j58A	359	6.251		
1lvk	762	6.484		
1y14B	171	6.611	b.40.4.5,d.230.1.1	116323,116324
1d0yA	761	8.120	b.34.3.1,c.37.1.9	24581,32178
2akaA	776	11.63		
1at0	145	12.01		
1go3E	187	13.46	b.40.4.5,d.230.1.1	83054,83055
1zeqX	84	14.81		
1mvwA	840	16.01	i.15.1.1	79523
3c0cA	73	16.05		
2g6fX	59	16.65		
1ywpA	64	17.47		
2bz8A	58	17.58		
1zlmA	58	17.58		
2inuA	410	17.75		
2gncA	60	17.79		
1y0mA	61	18.25		
2idrA	177	18.65		
2ak5A	64	18.86		
1zx6A	58	18.88		
2drmA	58	19.01		
1w70A	60	19.33		
2ba1A	179	19.50		
1x2kA	68	19.81		
1u06A	62	20.43	b.34.2.1	119404
2hdaA	64	20.85		
1wdxA	69	21.24		
1tg0A	68	21.42		
1yn8A	59	21.72		
1a0nB	69	22.05	b.34.2.1	24469
2d1xA	66	22.85		
1hd3A	62	25.23	b.34.2.1	65802
2jgbA	195	30.02		
3c8iA	141	31.27		
1qdlA	422	33.07	d.161.1.1	42088
3bzcA	785	33.38		
2iimA	62	33.43	b.34.2.1	137434
1yfnA	118	36.54	b.136.1.1	123080
1at0A	145	37.71	b.86.1.1	28374
1i76A	163	44.53	d.92.1.11	61877
2bkdN	134	46.18		
2bzyA	67	47.11		
2j6fA	62	50.77		
1semA	58	51.13	b.34.2.1	24544
1gxcA	149	51.27	b.26.1.2	70687
1x9iA	302	51.37	c.80.1.1	114997
2ggrA	76	52.05		
2nn6H	308	54.66		
1z9zA	60	56.72		
1ou8A	111	57.41	b.136.1.1	93543
1gcqA	61	57.96	b.34.2.1	60434
1oebA	62	61.63	b.34.2.1	86909
1zk7A	467	61.87		
1uj0A	62	61.98	b.34.2.1	99449
1i40A	175	62.62	b.40.5.1	66024
1utiA	58	62.69	b.34.2.1	99962
2vknA	70	64.94		
1shfA	59	66.46	b.34.2.1	24462
2z30B	65	66.72		
1zuyA	58	66.74		
1jo8A	58	69.53	b.34.2.1	71774
1zpsA	138	69.76	b.168.1.1	125473
1tuc	63	70.97		
2incC	83	72.09	d.15.12.1	137526
2o9sA	67	75.35		
2o31A	67	75.58		
2hqvA	195	77.28	e.62.1.2	136674
2a28A	54	79.21		
2dfuA	264	80.34		
1i2sA	282	81.87	e.3.1.1	71104
1ruwA	69	82.03		
1a8vA	121	82.41	a.140.3.1,b.40.4.5	64712,64713
1ckaA	57	85.25	b.34.2.1	24459
1mz4A	137	87.71	a.3.1.1	91496
1k3rA	268	88.20	b.40.4.10,c.116.1.2	72018,72019
2pi2A	270	88.84