# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	0.3373		
1w9iA	770	2.019		
2j58A	359	2.657		
1lvk	762	3.478		
1q46A	175	3.597	a.60.14.1,b.40.4.5	111594,111595
1at0	145	3.835		
1d0yA	761	4.633	b.34.3.1,c.37.1.9	24581,32178
2akaA	776	7.916		
1at0A	145	8.432	b.86.1.1	28374
2bz8A	58	9.069		
2drmA	58	10.98		
2g6fX	59	12.32		
1y14B	171	12.61	b.40.4.5,d.230.1.1	116323,116324
2ak5A	64	13.10		
1y0mA	61	13.24		
1ywpA	64	13.46		
2hdaA	64	13.71		
1mvwA	840	14.69	i.15.1.1	79523
3c0cA	73	15.28		
1go3E	187	16.48	b.40.4.5,d.230.1.1	83054,83055
1zx6A	58	16.72		
1yn8A	59	16.94		
2idrA	177	17.13		
1a0nB	69	17.88	b.34.2.1	24469
2gncA	60	18.23		
1wdxA	69	18.30		
1w70A	60	20.85		
1zeqX	84	21.59		
1u06A	62	21.96	b.34.2.1	119404
1zlmA	58	22.00		
1x2kA	68	22.86		
1tg0A	68	23.22		
2iimA	62	23.27	b.34.2.1	137434
3c8iA	141	24.39		
3bzcA	785	27.29		
1zk7A	467	30.25		
1hd3A	62	30.25	b.34.2.1	65802
2d1xA	66	30.30		
2ba1A	179	31.42		
2jgbA	195	34.74		
2bzyA	67	37.53		
1gxcA	149	38.61	b.26.1.2	70687
2j6fA	62	42.51		
1i40A	175	44.00	b.40.5.1	66024
2uubD	209	44.87	d.66.1.2	139935
1z9zA	60	45.92		
2vknA	70	46.28		
1qdlA	422	46.33	d.161.1.1	42088
2ggrA	76	46.98		
2incC	83	47.17	d.15.12.1	137526
1lm4A	194	48.43	d.167.1.1	84626
1z1zA	131	48.71	d.323.1.1	124366
1zuyA	58	50.48		
2dfuA	264	50.75		
2nn6H	308	50.91		
1widA	130	51.08	b.142.1.2	114667
1ve5A	311	55.15	c.79.1.1	120013
2z30B	65	55.87		
2arzA	247	58.75	b.45.1.1	127225
1i76A	163	59.75	d.92.1.11	61877
1semA	58	60.71	b.34.2.1	24544
1shfA	59	63.65	b.34.2.1	24462
1yfnA	118	63.82	b.136.1.1	123080
2id0A	644	63.94		
1jo8A	58	64.36	b.34.2.1	71774
2bkhA	814	65.65		
1a8vA	121	66.30	a.140.3.1,b.40.4.5	64712,64713
2fckA	181	68.13	d.108.1.1	133272
2fpeA	62	68.37		
2bkdN	134	69.45		
1ruwA	69	70.21		
1t0qC	86	70.59	d.15.12.1	106222
2hddA	61	71.09	a.4.1.1	15971
2gy9D	204	71.12		
1ckaA	57	71.38	b.34.2.1	24459
1gcqA	61	72.80	b.34.2.1	60434
2o9sA	67	73.79		
1ej1A	190	74.79	d.86.1.1	40144
2inuA	410	75.05		
1zmdA	474	75.31		
2o31A	67	76.50		
1uj0A	62	78.58	b.34.2.1	99449
1zpsA	138	79.44	b.168.1.1	125473
2vqeD	209	81.28		
2a28A	54	82.01		
1utiA	58	83.00	b.34.2.1	99962
1oebA	62	83.59	b.34.2.1	86909
2d4rA	147	84.76	d.129.3.6	131256
1x9iA	302	85.90	c.80.1.1	114997
1aisA	182	88.18	d.129.1.1,d.129.1.1	41288,41289
1wyxA	69	89.78