# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2a19A 175 0.4471 1w9iA 770 2.133 2j58A 359 3.454 1lvk 762 3.938 1d0yA 761 3.974 b.34.3.1,c.37.1.9 24581,32178 1at0 145 5.055 2akaA 776 5.175 1q46A 175 5.318 a.60.14.1,b.40.4.5 111594,111595 1mvwA 840 6.646 i.15.1.1 79523 1zeqX 84 8.765 1y14B 171 9.226 b.40.4.5,d.230.1.1 116323,116324 1yn8A 59 12.05 3c0cA 73 12.36 1a0nB 69 12.63 b.34.2.1 24469 1wdxA 69 12.63 1tg0A 68 12.88 2hdaA 64 14.12 1at0A 145 14.72 b.86.1.1 28374 3bzcA 785 14.78 2gncA 60 15.63 2g6fX 59 15.63 1zx6A 58 17.23 2nn6H 308 17.56 2drmA 58 17.92 1w70A 60 19.08 2ak5A 64 19.59 1ywpA 64 19.80 1zlmA 58 20.46 1go3E 187 21.47 b.40.4.5,d.230.1.1 83054,83055 2d1xA 66 21.68 1y0mA 61 21.91 2ba1A 179 22.34 2iimA 62 22.50 b.34.2.1 137434 1x2kA 68 22.71 3c8iA 141 22.94 2idrA 177 23.09 1u06A 62 23.15 b.34.2.1 119404 2bz8A 58 23.17 1hd3A 62 25.25 b.34.2.1 65802 1i76A 163 27.94 d.92.1.11 61877 2vknA 70 33.92 1gxcA 149 35.36 b.26.1.2 70687 2jgbA 195 35.89 1shfA 59 36.45 b.34.2.1 24462 1widA 130 37.30 b.142.1.2 114667 1i40A 175 40.10 b.40.5.1 66024 2o31A 67 42.64 2bzyA 67 42.72 2o9sA 67 45.11 2inuA 410 45.29 1z9zA 60 46.29 2ggrA 76 47.24 2ajrA 331 48.21 c.72.1.1 126892 2j6fA 62 48.80 1qdlA 422 49.27 d.161.1.1 42088 2qcpX 80 53.18 1uj0A 62 56.57 b.34.2.1 99449 2a28A 54 56.72 2gy9D 204 56.95 1oebA 62 57.79 b.34.2.1 86909 2bkdN 134 58.74 1jo8A 58 60.22 b.34.2.1 71774 1ckaA 57 60.93 b.34.2.1 24459 1gcqA 61 62.30 b.34.2.1 60434 2chcA 170 62.35 1semA 58 62.81 b.34.2.1 24544 2incC 83 64.21 d.15.12.1 137526 2d4rA 147 65.31 d.129.3.6 131256 2z30B 65 66.45 1aisA 182 66.46 d.129.1.1,d.129.1.1 41288,41289 2uubD 209 67.12 d.66.1.2 139935 2ja9A 175 68.70 2a08A 60 68.98 1wyxA 69 69.12 1utiA 58 69.61 b.34.2.1 99962 1zk7A 467 70.01 1z1zA 131 70.18 d.323.1.1 124366 1zuuA 58 70.60 b.34.2.1 125688 3cp0A 82 76.54 2dfuA 264 76.81 1ey4A 149 77.24 b.40.1.1 24815 2fckA 181 78.74 d.108.1.1 133272 1tuc 63 79.51 2hddA 61 80.60 a.4.1.1 15971 1yfnA 118 80.79 b.136.1.1 123080 2fpeA 62 80.82 2au7A 175 81.22 1i07A 60 81.94 b.34.2.1 61477 1lvlA 458 85.61 c.3.1.5,c.3.1.5,d.87.1.1 30567,30568,40205 1a8vA 121 86.73 a.140.3.1,b.40.4.5 64712,64713 1zuyA 58 87.15 1bb9 115 88.10 1t0qC 86 88.13 d.15.12.1 106222 2vqeD 209 88.32 2id0A 644 89.29 2arzA 247 89.61 b.45.1.1 127225