# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	2.850		
1q46A	175	3.594	a.60.14.1,b.40.4.5	111594,111595
1vk3A	615	5.322	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
3bzcA	785	10.00		
1lvk	762	10.88		
1d0yA	761	12.14	b.34.3.1,c.37.1.9	24581,32178
1at0A	145	13.60	b.86.1.1	28374
1at0	145	14.55		
1w9iA	770	18.25		
1qsoA	149	18.52	d.108.1.1	40812
2owpA	129	20.45		
2ja9A	175	21.02		
1mvwA	840	23.49	i.15.1.1	79523
1y14B	171	25.24	b.40.4.5,d.230.1.1	116323,116324
1yfnA	118	30.55	b.136.1.1	123080
2nn6H	308	30.76		
3c8iA	141	36.36		
1qsmA	152	37.31	d.108.1.1	40808
2je6I	251	38.05		
2iimA	62	38.31	b.34.2.1	137434
2ba1A	179	40.16		
2vacA	134	42.16		
1a0nB	69	42.56	b.34.2.1	24469
2akaA	776	42.99		
2hdaA	64	43.17		
1go3E	187	44.28	b.40.4.5,d.230.1.1	83054,83055
1zpsA	138	46.23	b.168.1.1	125473
2bkdN	134	49.71		
3c0cA	73	50.67		
1ci9A	392	50.98	e.3.1.1	64767
1yn8A	59	51.87		
2j58A	359	52.41		
1zlmA	58	52.51		
2g6fX	59	53.06		
2hs3A	603	54.65	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	136712,136713,136714,136715
2odiA	238	55.39		
1aisA	182	55.94	d.129.1.1,d.129.1.1	41288,41289
1wv3A	238	56.66	b.26.1.4,b.26.1.4	121318,121319
1ou8A	111	57.85	b.136.1.1	93543
2idrA	177	59.25		
2z30B	65	59.76		
1zeqX	84	60.46		
2d1xA	66	62.04		
2inuA	410	63.25		
1ruwA	69	68.61		
2vknA	70	68.77		
1tg0A	68	68.92		
1y0mA	61	70.52		
2ak5A	64	71.03		
1x2kA	68	71.91		
2pi2A	270	72.02		
2d8rA	99	72.10		
1z9zA	60	75.67		
1rgyA	360	76.67	e.3.1.1	97456
1a62	130	77.06		
2drmA	58	77.56		
1lci	550	79.89		
2hddA	61	82.53	a.4.1.1	15971
1ywpA	64	85.48		
1hd3A	62	86.29	b.34.2.1	65802
2chcA	170	86.51		
2bz8A	58	86.82		
1gxcA	149	89.03	b.26.1.2	70687