# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2a19A	175	1.623		
1q46A	175	9.337	a.60.14.1,b.40.4.5	111594,111595
2ba1A	179	13.36		
1go3E	187	15.45	b.40.4.5,d.230.1.1	83054,83055
2hdaA	64	18.68		
1tg0A	68	19.32		
2j58A	359	20.36		
2nn6H	308	20.98		
1y14B	171	22.30	b.40.4.5,d.230.1.1	116323,116324
1wdxA	69	23.16		
3c0cA	73	23.86		
1zlmA	58	26.11		
1zeqX	84	26.40		
1at0	145	27.07		
1z9zA	60	27.32		
2g6fX	59	29.04		
1ej1A	190	29.43	d.86.1.1	40144
1lvk	762	31.66		
2gncA	60	33.34		
1zx6A	58	34.40		
2drmA	58	34.85		
1yn8A	59	35.21		
1y0mA	61	36.22		
1a0nB	69	36.40	b.34.2.1	24469
2bz8A	58	36.44		
2ak5A	64	36.94		
1x2kA	68	36.95		
1w70A	60	38.22		
1ywpA	64	42.16		
3c8iA	141	42.49		
2vacA	134	44.00		
1zuyA	58	44.11		
2je6I	251	45.21		
2idrA	177	46.51		
1w9iA	770	47.16		
2iimA	62	49.68	b.34.2.1	137434
2ja9A	175	49.73		
2jgbA	195	49.92		
1hd3A	62	50.47	b.34.2.1	65802
2inuA	410	53.46		
2d1xA	66	56.73		
1gxcA	149	61.59	b.26.1.2	70687
2p8rA	273	63.40		
2fpeA	62	63.84		
1vk3A	615	64.10	d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1	100846,100847,100848,100849
1yfnA	118	66.00	b.136.1.1	123080
1l8bA	190	67.89	d.86.1.1	73683
1at0A	145	69.32	b.86.1.1	28374
1u06A	62	69.60	b.34.2.1	119404
3bzcA	785	72.46		
1shfA	59	72.62	b.34.2.1	24462
1g6gA	127	75.22	b.26.1.2	23916
1mvwA	840	75.69	i.15.1.1	79523
1zpsA	138	76.88	b.168.1.1	125473
1gnuA	117	78.23	d.15.1.3	65403
1xcbA	211	79.00	a.4.5.38,c.2.1.12	109552,109553
1gcqA	61	81.67	b.34.2.1	60434
2id0A	644	83.69		
2pi2A	270	87.23		
2ggrA	76	88.19