# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3cp0A 82 1.473 1y14B 171 3.367 b.40.4.5,d.230.1.1 116323,116324 1hh2P 344 3.616 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1smxA 96 4.102 b.40.4.5 105772 2ja9A 175 5.725 2a19A 175 8.983 1vfqA 143 9.708 d.109.1.2 120054 1ebfA 358 9.97 c.2.1.3,d.81.1.2 30033,39948 1xeeA 91 10.02 3biyA 380 11.82 1bkb 136 12.15 3bzcA 785 12.28 1bkbA 136 14.26 b.34.5.2,b.40.4.5 24609,25341 1go3E 187 15.55 b.40.4.5,d.230.1.1 83054,83055 1txoA 237 16.34 d.219.1.1 112781 1ujcA 161 17.42 2je6I 251 17.85 1t3yA 141 18.41 d.109.1.2 119141 1yu4A 381 19.24 b.163.1.1,d.169.1.8 124033,124034 1p7tA 731 22.56 c.1.13.1 94319 1yu1A 381 22.99 b.163.1.1,d.169.1.8 124027,124028 1d8cA 723 23.97 c.1.13.1 29325 1q46A 175 24.14 a.60.14.1,b.40.4.5 111594,111595 1lvk 762 26.33 1sotA 320 27.22 b.36.1.4,b.47.1.1 105852,105853 1jj2W 91 28.70 d.29.1.1 63108 2yv5A 302 28.92 1f5vA 240 29.18 d.90.1.1 40255 1q6uA 245 29.42 d.26.1.1 95998 2oqkA 117 32.15 2ba1A 179 32.27 2qgqA 304 34.76 1twfA 1733 35.52 e.29.1.2 112725 2gxfA 142 38.48 2qcvA 332 38.89 1yu2A 381 39.25 b.163.1.1,d.169.1.8 124029,124030 1l1jA 239 41.99 b.47.1.1 84516 1w9iA 770 43.97 1bkjA 240 44.09 d.90.1.1 40243 1ci9A 392 44.71 e.3.1.1 64767 2dfuA 264 45.50 1zs7A 190 47.12 b.122.1.1,d.17.6.4 125593,125594 1aw7A 194 48.63 b.40.2.2,d.15.6.1 25164,37753 1iow 306 48.83 2hgsA 474 50.40 c.30.1.4,d.142.1.6 31722,75997 3c8iA 141 50.41 1fd9A 213 52.86 d.26.1.1 59771 2akaA 776 53.35 1wi5A 119 53.40 b.40.4.5 114661 1d0yA 761 54.43 b.34.3.1,c.37.1.9 24581,32178 1vqoB 338 58.41 b.43.3.2 120363 1yu3A 381 60.26 b.163.1.1,d.169.1.8 124031,124032 2incC 83 60.36 d.15.12.1 137526 1gvhA 396 63.39 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2oxgB 124 64.13 1js8A 394 64.29 a.86.1.1,b.112.1.1 67219,67220 1auvA 311 65.74 c.30.1.5,d.142.1.3 31723,41558 2pkfA 334 66.74 3bb9A 148 67.00 2r58A 265 67.61 1yu0A 381 68.70 b.163.1.1,d.169.1.8 124025,124026 1iowA 306 69.61 c.30.1.2,d.142.1.1 31713,41481 1vqoX 92 70.48 d.29.1.1 120385 2oq0A 206 71.37 3c96A 415 72.99 1ugjA 141 73.42 b.41.1.3 107826 1vkkA 154 75.50 d.109.1.2 108669 1pqhA 143 76.03 b.52.2.1 95017 1widA 130 77.24 b.142.1.2 114667 1k3rA 268 78.74 b.40.4.10,c.116.1.2 72018,72019 1udmA 149 79.04 d.109.1.2 107780 1hqz1 141 79.62 2cx1A 187 80.68 b.122.1.1,d.17.6.4 130967,130968 2bf5A 98 80.71 d.137.1.1 128405 1mjcA 69 81.97 b.40.4.5 25319 2hqxA 246 82.59 b.34.9.1 136675 1mhnA 59 82.94 b.34.9.1 84964 1ecfA 504 83.41 c.61.1.1,d.153.1.1 34053,41820 1mjc 69 84.88 2hbpA 68 85.30 2p0aA 344 86.00