Best Alignments for T0408

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1vkeA/T0408-1vkeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vkeA/T0408-1vkeA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2428e-092.87e-28 a.152.1.2
3beyA/T0408-3beyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3beyA/T0408-3beyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.9756e-097.09e-31
2q0tA/T0408-2q0tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2q0tA/T0408-2q0tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7102e-087.58e-27
2qeuA/T0408-2qeuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2qeuA/T0408-2qeuA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2785e-065.60e-21
2ouwA/T0408-2ouwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ouwA/T0408-2ouwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.7310e-067.90e-26
1gu9A/T0408-1gu9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gu9A/T0408-1gu9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5053e-067.38e-24 a.152.1.1
2prrA/T0408-2prrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2prrA/T0408-2prrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.8674e-046.53e-22
3c1lA/T0408-3c1lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3c1lA/T0408-3c1lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.9038e-048.59e-18
2pfxA/T0408-2pfxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2pfxA/T0408-2pfxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3044e-035.69e-14
2gmyA/T0408-2gmyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gmyA/T0408-2gmyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0803e-038.53e-15 a.152.1.3

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001