# TARGET T0408 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-str2-from-empty.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0408.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 348 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.006 0.860 0.002 0.011 0.032 0.001 0.001 0.005 0.055 0.010 0.007 0.012 2 K 0.001 0.064 0.769 0.003 0.024 0.052 0.001 0.001 0.016 0.024 0.023 0.004 0.022 3 N 0.002 0.066 0.539 0.004 0.045 0.084 0.001 0.002 0.053 0.101 0.062 0.022 0.019 4 E 0.003 0.012 0.297 0.006 0.106 0.168 0.002 0.003 0.034 0.150 0.180 0.004 0.035 5 V 0.012 0.015 0.159 0.003 0.080 0.252 0.006 0.004 0.044 0.108 0.255 0.043 0.021 6 F 0.009 0.041 0.287 0.001 0.065 0.276 0.004 0.005 0.029 0.106 0.102 0.013 0.062 7 F 0.001 0.013 0.403 0.001 0.015 0.346 0.001 0.001 0.024 0.139 0.035 0.006 0.016 8 G 0.001 0.001 0.033 0.001 0.017 0.867 0.001 0.001 0.001 0.021 0.058 0.001 0.001 9 E 0.001 0.001 0.007 0.001 0.013 0.926 0.001 0.001 0.001 0.010 0.044 0.001 0.001 10 G 0.001 0.001 0.008 0.001 0.015 0.945 0.001 0.001 0.001 0.006 0.025 0.001 0.001 11 M 0.001 0.001 0.009 0.001 0.014 0.959 0.001 0.001 0.001 0.004 0.013 0.001 0.001 12 K 0.001 0.001 0.008 0.001 0.015 0.941 0.001 0.001 0.001 0.005 0.030 0.001 0.001 13 V 0.001 0.001 0.012 0.001 0.023 0.895 0.001 0.001 0.001 0.009 0.059 0.001 0.001 14 V 0.001 0.002 0.024 0.001 0.023 0.870 0.001 0.001 0.001 0.015 0.064 0.001 0.001 15 K 0.001 0.001 0.032 0.001 0.058 0.804 0.001 0.001 0.001 0.025 0.077 0.001 0.001 16 E 0.001 0.001 0.042 0.001 0.065 0.655 0.001 0.001 0.001 0.035 0.200 0.001 0.001 17 K 0.001 0.006 0.071 0.001 0.043 0.587 0.001 0.001 0.001 0.061 0.229 0.001 0.001 18 Y 0.001 0.001 0.406 0.001 0.010 0.375 0.001 0.001 0.001 0.173 0.032 0.001 0.001 19 P 0.001 0.001 0.029 0.001 0.024 0.856 0.001 0.001 0.001 0.009 0.080 0.001 0.001 20 D 0.001 0.001 0.016 0.001 0.013 0.916 0.001 0.001 0.001 0.015 0.039 0.001 0.001 21 L 0.001 0.001 0.010 0.001 0.009 0.965 0.001 0.001 0.001 0.006 0.009 0.001 0.001 22 Y 0.001 0.001 0.003 0.001 0.003 0.990 0.001 0.001 0.001 0.001 0.003 0.001 0.001 23 D 0.001 0.001 0.001 0.001 0.003 0.992 0.001 0.001 0.001 0.001 0.004 0.001 0.001 24 I 0.001 0.001 0.001 0.001 0.003 0.990 0.001 0.001 0.001 0.001 0.005 0.001 0.001 25 I 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 26 V 0.001 0.001 0.001 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.006 0.001 0.001 27 K 0.001 0.001 0.002 0.001 0.001 0.970 0.001 0.001 0.001 0.001 0.025 0.001 0.001 28 L 0.001 0.001 0.008 0.001 0.002 0.936 0.001 0.001 0.001 0.004 0.047 0.001 0.001 29 N 0.001 0.002 0.031 0.001 0.011 0.824 0.001 0.001 0.001 0.014 0.114 0.001 0.001 30 D 0.001 0.001 0.049 0.001 0.032 0.723 0.001 0.001 0.002 0.037 0.149 0.002 0.002 31 T 0.001 0.004 0.068 0.001 0.067 0.723 0.001 0.001 0.001 0.038 0.088 0.002 0.006 32 V 0.001 0.018 0.065 0.001 0.061 0.668 0.001 0.001 0.004 0.042 0.123 0.003 0.011 33 F 0.003 0.013 0.139 0.002 0.055 0.478 0.002 0.001 0.004 0.070 0.209 0.012 0.011 34 T 0.002 0.011 0.251 0.002 0.072 0.255 0.001 0.001 0.004 0.133 0.249 0.004 0.017 35 G 0.001 0.008 0.195 0.001 0.109 0.089 0.001 0.001 0.001 0.187 0.398 0.005 0.005 36 K 0.001 0.008 0.221 0.002 0.130 0.042 0.001 0.001 0.001 0.171 0.414 0.002 0.006 37 T 0.001 0.015 0.336 0.001 0.138 0.022 0.001 0.001 0.001 0.185 0.284 0.007 0.010 38 L 0.001 0.037 0.397 0.001 0.043 0.038 0.001 0.001 0.001 0.320 0.140 0.006 0.016 39 D 0.001 0.011 0.715 0.001 0.010 0.041 0.001 0.001 0.001 0.191 0.021 0.001 0.009 40 Y 0.001 0.001 0.041 0.001 0.030 0.754 0.001 0.001 0.001 0.042 0.131 0.001 0.001 41 K 0.001 0.001 0.020 0.001 0.016 0.866 0.001 0.001 0.001 0.036 0.061 0.001 0.001 42 T 0.001 0.001 0.011 0.001 0.009 0.963 0.001 0.001 0.001 0.009 0.005 0.001 0.002 43 Q 0.001 0.001 0.012 0.001 0.004 0.975 0.001 0.001 0.001 0.004 0.002 0.001 0.001 44 K 0.001 0.001 0.004 0.001 0.004 0.986 0.001 0.001 0.001 0.002 0.002 0.001 0.001 45 L 0.001 0.001 0.001 0.001 0.007 0.990 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 I 0.001 0.001 0.001 0.001 0.002 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 G 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 V 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 A 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 53 S 0.001 0.001 0.001 0.001 0.001 0.979 0.001 0.001 0.001 0.001 0.019 0.001 0.001 54 R 0.001 0.001 0.002 0.001 0.003 0.661 0.001 0.001 0.001 0.004 0.330 0.001 0.001 55 C 0.001 0.001 0.070 0.001 0.004 0.222 0.001 0.001 0.001 0.101 0.601 0.001 0.001 56 D 0.001 0.006 0.683 0.001 0.005 0.079 0.001 0.001 0.001 0.195 0.030 0.001 0.001 57 E 0.001 0.003 0.074 0.001 0.066 0.707 0.001 0.001 0.001 0.048 0.100 0.001 0.001 58 V 0.001 0.001 0.008 0.001 0.050 0.863 0.001 0.001 0.001 0.018 0.061 0.001 0.001 59 A 0.001 0.001 0.005 0.001 0.038 0.932 0.001 0.001 0.001 0.005 0.019 0.001 0.001 60 I 0.001 0.001 0.009 0.001 0.008 0.968 0.001 0.001 0.001 0.003 0.009 0.001 0.001 61 E 0.001 0.001 0.008 0.001 0.005 0.974 0.001 0.001 0.001 0.002 0.009 0.001 0.001 62 K 0.001 0.001 0.003 0.001 0.004 0.984 0.001 0.001 0.001 0.002 0.005 0.001 0.001 63 Q 0.001 0.001 0.001 0.001 0.002 0.990 0.001 0.001 0.001 0.001 0.005 0.001 0.001 64 M 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 65 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 66 S 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 67 A 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 68 M 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.003 0.001 0.001 69 K 0.001 0.001 0.002 0.001 0.006 0.979 0.001 0.001 0.001 0.001 0.011 0.001 0.001 70 E 0.001 0.001 0.002 0.001 0.021 0.865 0.001 0.001 0.001 0.003 0.108 0.001 0.001 71 L 0.001 0.001 0.003 0.001 0.007 0.166 0.001 0.001 0.001 0.017 0.807 0.001 0.001 72 G 0.001 0.001 0.042 0.001 0.002 0.015 0.001 0.001 0.001 0.042 0.898 0.001 0.001 73 I 0.001 0.025 0.847 0.001 0.001 0.004 0.001 0.001 0.003 0.114 0.005 0.001 0.002 74 T 0.001 0.020 0.900 0.001 0.001 0.009 0.001 0.001 0.005 0.058 0.001 0.001 0.006 75 K 0.001 0.001 0.004 0.001 0.013 0.965 0.001 0.001 0.001 0.004 0.013 0.001 0.001 76 E 0.001 0.001 0.003 0.001 0.016 0.966 0.001 0.001 0.001 0.002 0.013 0.001 0.001 77 E 0.001 0.001 0.001 0.001 0.007 0.988 0.001 0.001 0.001 0.001 0.003 0.001 0.001 78 I 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 D 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 81 V 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 82 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 R 0.001 0.001 0.001 0.001 0.002 0.990 0.001 0.001 0.001 0.001 0.007 0.001 0.001 84 V 0.001 0.001 0.001 0.001 0.003 0.986 0.001 0.001 0.001 0.001 0.009 0.001 0.001 85 V 0.001 0.001 0.001 0.001 0.002 0.993 0.001 0.001 0.001 0.001 0.003 0.001 0.001 86 L 0.001 0.001 0.001 0.001 0.003 0.982 0.001 0.001 0.001 0.001 0.012 0.001 0.001 87 L 0.001 0.001 0.001 0.001 0.002 0.958 0.001 0.001 0.001 0.002 0.035 0.001 0.001 88 T 0.001 0.001 0.011 0.001 0.007 0.887 0.001 0.001 0.001 0.013 0.080 0.001 0.001 89 S 0.001 0.003 0.039 0.001 0.010 0.770 0.001 0.001 0.001 0.044 0.132 0.001 0.001 90 G 0.001 0.003 0.093 0.001 0.006 0.734 0.001 0.001 0.001 0.085 0.078 0.001 0.001 91 M 0.001 0.001 0.015 0.001 0.004 0.948 0.001 0.001 0.001 0.023 0.010 0.001 0.001 92 P 0.001 0.001 0.001 0.001 0.005 0.989 0.001 0.001 0.001 0.001 0.004 0.001 0.001 93 A 0.001 0.001 0.001 0.001 0.005 0.991 0.001 0.001 0.001 0.001 0.003 0.001 0.001 94 F 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 T 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 96 K 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 97 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 98 M 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 99 K 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 100 I 0.001 0.001 0.001 0.001 0.002 0.982 0.001 0.001 0.001 0.001 0.014 0.001 0.001 101 L 0.001 0.001 0.002 0.001 0.007 0.934 0.001 0.001 0.001 0.003 0.053 0.001 0.001 102 E 0.001 0.001 0.019 0.001 0.015 0.719 0.001 0.001 0.001 0.015 0.230 0.001 0.001 103 K 0.001 0.004 0.062 0.001 0.017 0.455 0.001 0.001 0.001 0.017 0.442 0.001 0.001 104 L 0.001 0.001 0.711 0.001 0.004 0.161 0.001 0.001 0.001 0.090 0.029 0.001 0.001