# TARGET T0408 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0408.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 155.123 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.230 0.110 0.227 0.209 0.031 0.040 0.090 0.013 0.045 0.004 0.001 2 K 0.450 0.194 0.192 0.078 0.026 0.020 0.016 0.004 0.012 0.007 0.001 3 N 0.263 0.124 0.206 0.147 0.044 0.110 0.052 0.005 0.039 0.008 0.001 4 E 0.599 0.094 0.082 0.159 0.027 0.016 0.008 0.005 0.007 0.002 0.001 5 V 0.509 0.191 0.107 0.112 0.040 0.017 0.007 0.003 0.012 0.002 0.001 6 F 0.381 0.292 0.144 0.083 0.022 0.039 0.007 0.002 0.030 0.002 0.001 7 F 0.319 0.190 0.243 0.117 0.038 0.037 0.015 0.002 0.034 0.005 0.001 8 G 0.602 0.015 0.085 0.017 0.036 0.004 0.024 0.093 0.002 0.120 0.001 9 E 0.917 0.007 0.021 0.040 0.003 0.003 0.005 0.002 0.001 0.001 0.001 10 G 0.935 0.004 0.012 0.031 0.003 0.002 0.004 0.005 0.001 0.004 0.001 11 M 0.976 0.004 0.011 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 K 0.992 0.001 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 V 0.991 0.002 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 V 0.966 0.005 0.004 0.025 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 K 0.975 0.004 0.008 0.004 0.001 0.002 0.004 0.001 0.001 0.001 0.001 16 E 0.982 0.003 0.003 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 K 0.601 0.006 0.006 0.383 0.001 0.002 0.001 0.001 0.001 0.001 0.001 18 Y 0.140 0.065 0.163 0.014 0.019 0.010 0.009 0.001 0.570 0.009 0.001 19 P 0.902 0.001 0.065 0.014 0.001 0.005 0.001 0.001 0.001 0.001 0.010 20 D 0.714 0.008 0.051 0.130 0.008 0.051 0.010 0.012 0.012 0.003 0.001 21 L 0.954 0.002 0.002 0.040 0.001 0.002 0.001 0.001 0.001 0.001 0.001 22 Y 0.992 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 D 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 I 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 I 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 V 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 27 K 0.985 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 28 L 0.860 0.002 0.003 0.133 0.001 0.001 0.001 0.001 0.001 0.001 0.001 29 N 0.715 0.011 0.038 0.127 0.006 0.006 0.054 0.031 0.006 0.005 0.001 30 D 0.681 0.017 0.045 0.081 0.016 0.013 0.115 0.023 0.003 0.007 0.001 31 T 0.706 0.082 0.084 0.092 0.019 0.009 0.002 0.001 0.004 0.001 0.001 32 V 0.721 0.124 0.051 0.062 0.013 0.015 0.002 0.001 0.011 0.001 0.001 33 F 0.500 0.181 0.085 0.141 0.019 0.040 0.009 0.001 0.024 0.001 0.001 34 T 0.185 0.213 0.122 0.346 0.037 0.021 0.022 0.002 0.048 0.003 0.001 35 G 0.119 0.008 0.087 0.022 0.059 0.003 0.116 0.197 0.003 0.386 0.001 36 K 0.533 0.021 0.090 0.192 0.013 0.039 0.082 0.019 0.006 0.003 0.003 37 T 0.384 0.129 0.100 0.310 0.022 0.015 0.020 0.005 0.012 0.002 0.001 38 L 0.127 0.254 0.375 0.103 0.046 0.051 0.019 0.002 0.019 0.004 0.001 39 D 0.137 0.154 0.560 0.013 0.020 0.062 0.005 0.001 0.045 0.003 0.001 40 Y 0.983 0.001 0.005 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 41 K 0.989 0.001 0.002 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 42 T 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 G 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 A 0.982 0.001 0.001 0.018 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 S 0.953 0.001 0.004 0.039 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 R 0.278 0.001 0.007 0.708 0.001 0.001 0.003 0.001 0.001 0.001 0.001 55 C 0.046 0.003 0.028 0.064 0.023 0.008 0.375 0.411 0.006 0.037 0.001 56 D 0.065 0.099 0.383 0.044 0.050 0.232 0.031 0.002 0.077 0.017 0.001 57 E 0.896 0.016 0.040 0.030 0.005 0.007 0.002 0.002 0.001 0.001 0.001 58 V 0.966 0.003 0.006 0.017 0.001 0.001 0.002 0.002 0.001 0.001 0.001 59 A 0.992 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 I 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 K 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 Q 0.982 0.001 0.001 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 M 0.980 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 K 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 S 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 A 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 M 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 69 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 70 E 0.969 0.001 0.001 0.030 0.001 0.001 0.001 0.001 0.001 0.001 0.001 71 L 0.192 0.001 0.005 0.802 0.001 0.001 0.001 0.001 0.001 0.001 0.001 72 G 0.002 0.001 0.001 0.006 0.001 0.001 0.238 0.737 0.001 0.015 0.001 73 I 0.001 0.188 0.754 0.005 0.018 0.030 0.001 0.001 0.002 0.001 0.001 74 T 0.003 0.081 0.856 0.001 0.036 0.018 0.001 0.001 0.003 0.002 0.001 75 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 76 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 77 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 78 I 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 D 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 81 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 84 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 85 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 86 L 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 87 L 0.979 0.001 0.001 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 88 T 0.795 0.003 0.004 0.192 0.001 0.001 0.001 0.001 0.002 0.001 0.001 89 S 0.617 0.007 0.035 0.271 0.011 0.005 0.038 0.008 0.003 0.007 0.001 90 G 0.486 0.004 0.031 0.128 0.020 0.007 0.058 0.197 0.001 0.068 0.001 91 M 0.815 0.022 0.095 0.012 0.009 0.023 0.003 0.001 0.017 0.004 0.001 92 P 0.995 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 93 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 F 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 T 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 96 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 97 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 98 M 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 99 K 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 100 I 0.995 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 101 L 0.941 0.001 0.001 0.057 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 E 0.976 0.001 0.010 0.009 0.001 0.001 0.003 0.001 0.001 0.001 0.001 103 K 0.632 0.002 0.005 0.352 0.001 0.002 0.002 0.002 0.001 0.001 0.001 104 L 0.297 0.086 0.403 0.106 0.007 0.060 0.006 0.001 0.033 0.001 0.001