# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2q0tA 263 3.09e-05 1p8cA 145 2.10e-04 a.152.1.2 94354 1vkeA 133 2.85e-04 a.152.1.2 108650 1gu9A 177 9.44e-04 a.152.1.1 65540 3beyA 96 1.49e-03 1lw1A 177 1.64e-03 a.152.1.1 74290 2prrA 197 3.63e-02 3c1lA 188 4.53e-02 2ouwA 138 4.96e-02 2gmyA 153 7.22e-02 a.152.1.3 135398 2o4dA 165 7.35e-02 a.152.1.3 138907 2ijcA 145 8.00e-02 a.152.1.3 137465 2qeuA 141 1.06e-01 2pfxA 191 1.64e-01 2oyoA 196 5.09e-01 2b8nA 429 7.45e-01 c.118.1.1 128093 1ztcA 221 1.36e+00 d.157.1.11 125635 2b8eA 273 2.08e+00 c.108.1.7,d.220.1.1 128068,128069 1schA 294 3.93e+00 1bgp a.93.1.1 18685 2v40A 459 4.28e+00 1smlA 269 7.42e+00 1smlA d.157.1.1 42053 1txuA 273 8.50e+00 a.222.1.1 107439 3c9fA 557 9.06e+00 1iweA 457 9.41e+00 c.37.1.10 71486 1jf9A 408 9.58e+00 1c0nA c.67.1.3 62931 2f82A 450 9.72e+00 2aioA 269 9.75e+00 d.157.1.1 126829 1fc3A 120 9.78e+00 1fc3A a.4.6.3 16237 1y56A 493 9.83e+00 1kmkA 406 9.87e+00 c.67.1.3 68696 1qdbA 473 1.14e+01 1qdbA a.138.1.3 19688 1fs7A 485 1.23e+01 1qdbA a.138.1.3 19691 1ho8A 480 1.27e+01 1ho8A a.118.1.9 61107 3bnjA 485 1.33e+01 2rdzA 452 1.38e+01 2ebdA 309 1.56e+01 2v26A 784 1.70e+01 1x3lA 440 1.78e+01 1jqoA 970 1.89e+01 c.1.12.3 77160 2fhwA 24 1.91e+01 3cneA 175 2.01e+01 1kblA 873 2.03e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1gajA 257 2.06e+01 1gajA c.37.1.12 60416 2i2xB 258 2.15e+01 2ot3A 274 2.29e+01 a.222.1.1 139311 1g6hA 257 2.29e+01 1gajA c.37.1.12 60318 1ur5A 309 2.46e+01 c.2.1.5,d.162.1.1 99807,99808 1r9kA 172 2.46e+01 a.168.1.1 104869 1zcjA 463 2.59e+01 1y10A 407 2.69e+01 1tfb 208 2.78e+01 1tfb 1pa2A 306 2.80e+01 1bgp a.93.1.1 18693 2bcgG 453 2.82e+01 c.3.1.3,c.3.1.3,d.16.1.6 128282,128283,128284 1abrA 251 2.84e+01 1mrj d.165.1.1 42196 3c1mA 473 2.90e+01 2bgxA 261 2.94e+01 a.20.1.1,d.118.1.1 128504,128505 2p8uA 478 3.11e+01 2qiaA 262 3.21e+01 1w63A 618 3.25e+01 i.23.1.1 109192 1c0nA 406 3.26e+01 1c0nA c.67.1.3 34433 1c9bA 207 3.27e+01 1tfb a.74.1.2,a.74.1.2 18372,18373 1n45A 233 3.30e+01 a.132.1.1 79981 2q0lA 311 3.31e+01 1sekA 378 3.35e+01 e.1.1.1 42675 1t3iA 420 3.42e+01 c.67.1.3 106354 1q3iA 214 3.42e+01 d.220.1.1 104524 1bd3A 243 3.42e+01 1bd3A c.61.1.1 34098 1vjrA 271 3.46e+01 c.108.1.14 100832 2ev1A 222 3.47e+01 1xgwA 176 3.47e+01 1dik 874 3.50e+01 1dik 2nq2C 253 3.53e+01 2bkhA 814 3.55e+01 1qhfA 240 3.67e+01 1qhfA c.60.1.1 33960 1j58A 385 3.76e+01 b.82.1.2 71531 1aru 344 3.77e+01 1arv 2aq9A 262 3.80e+01 b.81.1.1 127167 3c4nA 405 3.88e+01 2jf2A 264 3.94e+01 b.81.1.1 138289 1u59A 287 3.96e+01 d.144.1.7 107681 1bs4A 168 3.98e+01 1bs4A d.167.1.1 42287 1xfjA 261 4.03e+01 d.194.1.2 109585 1r59O 505 4.15e+01 c.55.1.4,c.55.1.4 111697,111698 1a0p 290 4.19e+01 1a0p 1a0pA 290 4.19e+01 a.60.9.1,d.163.1.1 18105,42165 1g6uA 48 4.29e+01 1g6uA k.9.1.1 46425 1xeoA 168 4.35e+01 d.167.1.1 121913 1rxwA 336 4.37e+01 a.60.7.1,c.120.1.2 98059,98060 2bw8A 227 4.48e+01 b.29.1.11 129324 1lycA 343 4.53e+01 a.93.1.1 74344 1j8mF 297 4.55e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1arv 344 4.57e+01 1arv 1uedA 406 4.75e+01 a.104.1.1 99256 2fb2A 340 4.83e+01 1uxjA 309 4.87e+01 c.2.1.5,d.162.1.1 108112,108113 2r2dA 276 4.92e+01 1h0bA 256 5.02e+01 b.29.1.11 83422 1xkqA 280 5.06e+01 c.2.1.2 115417 3c6gA 479 5.10e+01 1u9yA 284 5.44e+01 c.61.1.2,c.61.1.2 119655,119656 1wz9A 375 5.45e+01 1anv 356 5.48e+01 1anv 1xdiA 499 5.49e+01 c.3.1.5,d.87.1.1 115160,115161 1s5jA 847 5.50e+01 c.55.3.5,e.8.1.1 112040,112041 1hyuA 521 5.54e+01 1hyuA c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1t9bA 677 5.54e+01 c.31.1.3,c.36.1.5,c.36.1.9 112334,112335,112336 2oulA 241 5.64e+01 1ezwA 349 5.75e+01 1ezwA c.1.16.3 29558 1adt 356 5.79e+01 1anv 1adtA 356 5.79e+01 a.54.1.1,g.51.1.1,g.51.1.1 17887,45362,45368 2od5A 116 5.82e+01 2hekA 371 5.85e+01 a.211.1.1 136354 1rypJ 204 5.91e+01 d.153.1.4 41878 1jpaA 312 5.97e+01 d.144.1.7 67011 1tv8A 340 6.04e+01 c.1.28.3 107352 1ea3A 164 6.09e+01 1aa7A a.95.1.1 59398 2r5kA 424 6.10e+01 2bgsA 344 6.12e+01 1m6nA 802 6.16e+01 a.162.1.1,a.172.1.1,c.37.1.19,c.37.1.19 78697,78698,78699,78700 1xhlA 297 6.24e+01 c.2.1.2 109591 1hjsA 332 6.27e+01 c.1.8.3 83492 1nn7A 105 6.33e+01 d.42.1.2 85894 1jnrA 643 6.50e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 2e3bA 344 6.55e+01 a.93.1.1 132024 2fjbA 643 6.56e+01 2p0iA 456 6.57e+01 1vlrA 350 6.61e+01 d.13.1.3,d.246.1.1 108860,108861 1lxa 262 6.63e+01 1lxa 2a2aA 321 6.65e+01 1vz0A 230 6.65e+01 a.4.14.1,d.268.1.1 108929,108930 1vmiA 355 6.67e+01 c.77.1.5 113678 1g0uI 205 6.69e+01 d.153.1.4 41891 1pytC 253 6.71e+01 5ptp b.47.1.2 26233 1r3eA 309 6.76e+01 b.122.1.1,d.265.1.2 96907,96908 1ydgA 211 6.79e+01 c.23.5.8 116614 1a8qA 274 6.85e+01 c.69.1.12 34702 3ciwA 348 6.93e+01 1i6wA 181 6.95e+01 1i6wA c.69.1.18 61859 2zadA 345 7.03e+01 1g5bA 221 7.11e+01 1g5bA d.159.1.3 60261 1cxlA 686 7.11e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21829,22498,27736,28723 1lwjA 441 7.12e+01 b.71.1.1,c.1.8.1 74303,74304 1khyA 148 7.16e+01 a.174.1.1 77410 3brbA 313 7.31e+01 2i10A 202 7.32e+01 a.4.1.9,a.121.1.1 136960,136961 1fonA 240 7.39e+01 5ptp b.47.1.2 26231 1qwkA 317 7.39e+01 c.1.7.1 96482 1ispA 181 7.44e+01 c.69.1.18 76778 1qo8A 566 7.45e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1dlyA 164 7.57e+01 1dlyA a.1.1.1 14983 1aa7A 158 7.57e+01 1aa7A a.95.1.1 18741 2h88A 621 7.62e+01 1uf3A 228 7.70e+01 d.159.1.6 99317 1d3cA 686 7.71e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2a14A 263 7.72e+01 c.66.1.15 125972 1jd0A 263 7.81e+01 2cba b.74.1.1 62888 1wthD 391 7.86e+01 b.106.1.1,b.106.1.1 121268,121269 1ot1A 686 7.91e+01 b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 87392,87393,87394,87395 2gsmB 262 7.91e+01 b.6.1.2,f.17.2.1 135590,135591 1lqyA 184 7.93e+01 d.167.1.1 74212 1j8yF 297 7.94e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748