# TARGET T0408 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0408.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 904 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.028 0.011 0.011 0.029 0.240 0.681 2 K 0.046 0.022 0.025 0.085 0.266 0.556 3 N 0.042 0.012 0.072 0.132 0.337 0.404 4 E 0.074 0.012 0.159 0.221 0.308 0.226 5 V 0.120 0.017 0.164 0.290 0.211 0.197 6 F 0.138 0.029 0.080 0.315 0.174 0.263 7 F 0.079 0.017 0.027 0.419 0.129 0.329 8 G 0.026 0.003 0.022 0.711 0.100 0.139 9 E 0.005 0.001 0.022 0.910 0.041 0.021 10 G 0.005 0.002 0.016 0.947 0.018 0.012 11 M 0.005 0.001 0.020 0.947 0.016 0.011 12 K 0.003 0.001 0.019 0.958 0.011 0.009 13 V 0.002 0.001 0.018 0.962 0.009 0.008 14 V 0.002 0.002 0.024 0.935 0.019 0.019 15 K 0.002 0.001 0.028 0.884 0.053 0.032 16 E 0.001 0.001 0.022 0.882 0.053 0.040 17 K 0.001 0.002 0.011 0.828 0.062 0.096 18 Y 0.001 0.002 0.004 0.123 0.156 0.712 19 P 0.001 0.001 0.027 0.809 0.061 0.102 20 D 0.001 0.001 0.024 0.917 0.029 0.028 21 L 0.001 0.001 0.007 0.989 0.003 0.001 22 Y 0.001 0.001 0.003 0.993 0.002 0.001 23 D 0.001 0.001 0.002 0.993 0.003 0.001 24 I 0.002 0.001 0.003 0.991 0.003 0.001 25 I 0.001 0.001 0.002 0.994 0.002 0.001 26 V 0.001 0.001 0.005 0.988 0.004 0.002 27 K 0.001 0.001 0.006 0.983 0.006 0.004 28 L 0.002 0.001 0.009 0.942 0.018 0.028 29 N 0.004 0.002 0.017 0.828 0.055 0.093 30 D 0.007 0.001 0.070 0.727 0.109 0.086 31 T 0.026 0.003 0.115 0.657 0.133 0.067 32 V 0.098 0.016 0.092 0.530 0.174 0.090 33 F 0.109 0.023 0.060 0.441 0.246 0.121 34 T 0.079 0.014 0.046 0.290 0.351 0.219 35 G 0.024 0.008 0.054 0.077 0.630 0.207 36 K 0.015 0.007 0.090 0.046 0.626 0.215 37 T 0.020 0.020 0.049 0.017 0.502 0.392 38 L 0.031 0.034 0.013 0.011 0.422 0.489 39 D 0.014 0.005 0.003 0.016 0.147 0.816 40 Y 0.026 0.014 0.021 0.662 0.090 0.188 41 K 0.013 0.003 0.007 0.927 0.023 0.026 42 T 0.008 0.002 0.008 0.947 0.008 0.028 43 Q 0.001 0.001 0.002 0.996 0.001 0.001 44 K 0.001 0.001 0.001 0.997 0.001 0.001 45 L 0.001 0.001 0.001 0.999 0.001 0.001 46 I 0.001 0.001 0.002 0.998 0.001 0.001 47 A 0.001 0.001 0.001 0.999 0.001 0.001 48 I 0.001 0.001 0.001 0.996 0.002 0.001 49 G 0.001 0.001 0.002 0.993 0.004 0.001 50 I 0.001 0.001 0.003 0.992 0.003 0.001 51 V 0.003 0.001 0.005 0.984 0.004 0.003 52 A 0.010 0.003 0.006 0.945 0.016 0.020 53 S 0.019 0.011 0.008 0.587 0.060 0.315 54 R 0.004 0.007 0.005 0.067 0.142 0.775 55 C 0.006 0.024 0.008 0.036 0.314 0.612 56 D 0.011 0.008 0.005 0.050 0.203 0.724 57 E 0.009 0.004 0.010 0.676 0.121 0.180 58 V 0.001 0.001 0.006 0.960 0.019 0.013 59 A 0.003 0.001 0.005 0.965 0.013 0.013 60 I 0.002 0.001 0.002 0.990 0.003 0.003 61 E 0.003 0.001 0.003 0.987 0.003 0.004 62 K 0.003 0.001 0.006 0.979 0.006 0.007 63 Q 0.001 0.001 0.004 0.984 0.003 0.006 64 M 0.001 0.001 0.001 0.996 0.001 0.002 65 K 0.001 0.001 0.001 0.999 0.001 0.001 66 S 0.001 0.001 0.001 0.999 0.001 0.001 67 A 0.001 0.001 0.001 0.999 0.001 0.001 68 M 0.001 0.001 0.001 0.998 0.001 0.001 69 K 0.001 0.001 0.001 0.997 0.002 0.001 70 E 0.001 0.001 0.002 0.988 0.005 0.005 71 L 0.001 0.001 0.006 0.866 0.024 0.103 72 G 0.001 0.001 0.001 0.001 0.016 0.982 73 I 0.002 0.006 0.001 0.002 0.053 0.935 74 T 0.004 0.004 0.001 0.003 0.033 0.956 75 K 0.001 0.001 0.008 0.982 0.003 0.007 76 E 0.001 0.001 0.004 0.995 0.001 0.001 77 E 0.001 0.001 0.002 0.998 0.001 0.001 78 I 0.001 0.001 0.001 0.999 0.001 0.001 79 A 0.001 0.001 0.001 0.999 0.001 0.001 80 D 0.001 0.001 0.001 0.999 0.001 0.001 81 V 0.001 0.001 0.001 0.999 0.001 0.001 82 L 0.001 0.001 0.001 0.999 0.001 0.001 83 R 0.001 0.001 0.001 0.999 0.001 0.001 84 V 0.001 0.001 0.001 0.999 0.001 0.001 85 V 0.001 0.001 0.001 0.998 0.001 0.001 86 L 0.001 0.001 0.002 0.996 0.001 0.001 87 L 0.001 0.001 0.004 0.994 0.002 0.001 88 T 0.001 0.001 0.005 0.987 0.005 0.002 89 S 0.001 0.001 0.008 0.933 0.016 0.042 90 G 0.001 0.003 0.008 0.595 0.038 0.355 91 M 0.001 0.002 0.010 0.904 0.026 0.057 92 P 0.001 0.001 0.008 0.981 0.006 0.004 93 A 0.001 0.001 0.008 0.984 0.005 0.003 94 F 0.001 0.001 0.003 0.994 0.002 0.001 95 T 0.001 0.001 0.003 0.994 0.002 0.001 96 K 0.001 0.001 0.003 0.993 0.002 0.001 97 A 0.001 0.001 0.003 0.993 0.002 0.002 98 M 0.001 0.001 0.003 0.993 0.003 0.001 99 K 0.001 0.001 0.004 0.992 0.003 0.001 100 I 0.001 0.001 0.004 0.991 0.003 0.002 101 L 0.001 0.001 0.015 0.957 0.012 0.016 102 E 0.001 0.001 0.030 0.909 0.030 0.028 103 K 0.002 0.001 0.022 0.801 0.048 0.125 104 L 0.004 0.005 0.010 0.308 0.085 0.587