# TARGET T0408 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0408.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 904 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.002 0.020 0.667 0.003 0.017 0.040 0.001 0.001 0.001 0.155 0.061 0.018 0.015 2 K 0.001 0.012 0.694 0.001 0.036 0.054 0.001 0.001 0.001 0.093 0.094 0.004 0.011 3 N 0.001 0.005 0.242 0.001 0.187 0.292 0.001 0.001 0.001 0.112 0.151 0.002 0.006 4 E 0.001 0.003 0.099 0.002 0.290 0.363 0.001 0.001 0.001 0.060 0.173 0.003 0.006 5 V 0.002 0.015 0.098 0.001 0.240 0.421 0.001 0.001 0.004 0.069 0.130 0.009 0.010 6 F 0.004 0.030 0.171 0.001 0.094 0.468 0.001 0.001 0.009 0.077 0.111 0.013 0.020 7 F 0.002 0.014 0.296 0.002 0.024 0.495 0.001 0.001 0.007 0.084 0.051 0.009 0.014 8 G 0.001 0.001 0.081 0.001 0.034 0.765 0.001 0.001 0.001 0.034 0.080 0.002 0.002 9 E 0.001 0.003 0.045 0.001 0.041 0.785 0.001 0.001 0.001 0.025 0.097 0.001 0.002 10 G 0.001 0.003 0.029 0.001 0.036 0.840 0.001 0.001 0.001 0.010 0.078 0.001 0.001 11 M 0.001 0.002 0.021 0.001 0.019 0.928 0.001 0.001 0.001 0.010 0.018 0.001 0.001 12 K 0.001 0.001 0.012 0.001 0.018 0.942 0.001 0.001 0.001 0.006 0.019 0.001 0.001 13 V 0.001 0.001 0.010 0.001 0.023 0.935 0.001 0.001 0.001 0.004 0.025 0.001 0.002 14 V 0.001 0.001 0.024 0.001 0.017 0.927 0.001 0.001 0.001 0.008 0.023 0.001 0.001 15 K 0.001 0.001 0.024 0.001 0.065 0.811 0.001 0.001 0.001 0.014 0.083 0.001 0.001 16 E 0.001 0.001 0.014 0.001 0.063 0.670 0.001 0.001 0.001 0.011 0.239 0.001 0.001 17 K 0.001 0.002 0.041 0.001 0.050 0.569 0.001 0.001 0.001 0.031 0.307 0.001 0.001 18 Y 0.001 0.002 0.477 0.001 0.005 0.275 0.001 0.001 0.001 0.221 0.019 0.001 0.001 19 P 0.001 0.001 0.029 0.001 0.015 0.897 0.001 0.001 0.001 0.013 0.046 0.001 0.001 20 D 0.001 0.001 0.009 0.001 0.009 0.955 0.001 0.001 0.001 0.004 0.022 0.001 0.001 21 L 0.001 0.001 0.003 0.001 0.005 0.985 0.001 0.001 0.001 0.001 0.005 0.001 0.001 22 Y 0.001 0.001 0.002 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 23 D 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 24 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 25 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 26 V 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 27 K 0.001 0.001 0.001 0.001 0.001 0.978 0.001 0.001 0.001 0.001 0.020 0.001 0.001 28 L 0.001 0.001 0.006 0.001 0.001 0.933 0.001 0.001 0.001 0.002 0.057 0.001 0.001 29 N 0.001 0.002 0.039 0.001 0.009 0.879 0.001 0.001 0.001 0.019 0.053 0.001 0.001 30 D 0.001 0.001 0.020 0.001 0.044 0.856 0.001 0.001 0.001 0.024 0.055 0.001 0.001 31 T 0.001 0.001 0.011 0.001 0.049 0.873 0.001 0.001 0.002 0.009 0.052 0.001 0.001 32 V 0.001 0.005 0.029 0.001 0.058 0.817 0.001 0.001 0.004 0.020 0.058 0.001 0.005 33 F 0.002 0.018 0.087 0.002 0.063 0.587 0.001 0.002 0.009 0.043 0.174 0.006 0.005 34 T 0.002 0.018 0.140 0.002 0.071 0.340 0.001 0.003 0.007 0.084 0.313 0.006 0.011 35 G 0.001 0.008 0.272 0.003 0.055 0.069 0.001 0.001 0.001 0.223 0.358 0.005 0.004 36 K 0.001 0.004 0.217 0.002 0.075 0.020 0.001 0.001 0.001 0.157 0.518 0.001 0.006 37 T 0.001 0.027 0.309 0.001 0.092 0.024 0.001 0.001 0.001 0.197 0.339 0.005 0.006 38 L 0.001 0.032 0.525 0.001 0.013 0.020 0.001 0.001 0.001 0.330 0.069 0.004 0.005 39 D 0.001 0.010 0.709 0.001 0.005 0.088 0.001 0.001 0.001 0.162 0.018 0.001 0.007 40 Y 0.001 0.001 0.004 0.001 0.004 0.983 0.001 0.001 0.001 0.002 0.006 0.001 0.001 41 K 0.001 0.001 0.001 0.001 0.002 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 42 T 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 43 Q 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 44 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 45 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 46 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 47 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 I 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 G 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.003 0.001 0.001 50 I 0.001 0.001 0.003 0.001 0.002 0.974 0.001 0.001 0.001 0.002 0.017 0.001 0.001 51 V 0.001 0.001 0.019 0.001 0.004 0.908 0.001 0.001 0.002 0.004 0.059 0.001 0.001 52 A 0.003 0.005 0.055 0.001 0.023 0.682 0.001 0.001 0.004 0.025 0.193 0.002 0.006 53 S 0.001 0.008 0.141 0.001 0.029 0.353 0.001 0.001 0.004 0.126 0.329 0.004 0.004 54 R 0.001 0.015 0.230 0.002 0.024 0.096 0.001 0.001 0.003 0.367 0.251 0.005 0.006 55 C 0.001 0.015 0.422 0.001 0.020 0.055 0.001 0.001 0.002 0.370 0.109 0.002 0.004 56 D 0.001 0.008 0.287 0.001 0.059 0.196 0.001 0.001 0.001 0.162 0.284 0.001 0.002 57 E 0.001 0.002 0.162 0.001 0.064 0.545 0.001 0.001 0.001 0.092 0.132 0.001 0.001 58 V 0.001 0.002 0.041 0.001 0.018 0.880 0.001 0.001 0.001 0.016 0.042 0.001 0.001 59 A 0.001 0.002 0.021 0.001 0.014 0.936 0.001 0.001 0.001 0.006 0.020 0.001 0.001 60 I 0.001 0.001 0.016 0.001 0.010 0.961 0.001 0.001 0.001 0.004 0.007 0.001 0.001 61 E 0.001 0.001 0.006 0.001 0.004 0.978 0.001 0.001 0.001 0.005 0.007 0.001 0.001 62 K 0.001 0.001 0.003 0.001 0.001 0.983 0.001 0.001 0.001 0.003 0.009 0.001 0.001 63 Q 0.001 0.001 0.003 0.001 0.001 0.989 0.001 0.001 0.001 0.001 0.006 0.001 0.001 64 M 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 65 K 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 66 S 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 67 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 68 M 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.007 0.001 0.001 69 K 0.001 0.001 0.001 0.001 0.004 0.954 0.001 0.001 0.001 0.001 0.041 0.001 0.001 70 E 0.001 0.001 0.002 0.001 0.010 0.854 0.001 0.001 0.001 0.002 0.131 0.001 0.001 71 L 0.001 0.001 0.023 0.001 0.013 0.388 0.001 0.001 0.001 0.072 0.502 0.001 0.001 72 G 0.001 0.005 0.192 0.001 0.005 0.011 0.001 0.001 0.001 0.209 0.577 0.001 0.001 73 I 0.001 0.024 0.867 0.001 0.001 0.001 0.001 0.001 0.001 0.104 0.001 0.001 0.001 74 T 0.001 0.017 0.952 0.001 0.001 0.001 0.001 0.001 0.001 0.025 0.001 0.001 0.003 75 K 0.001 0.001 0.002 0.001 0.020 0.970 0.001 0.001 0.001 0.001 0.007 0.001 0.001 76 E 0.001 0.001 0.001 0.001 0.008 0.989 0.001 0.001 0.001 0.001 0.002 0.001 0.001 77 E 0.001 0.001 0.001 0.001 0.003 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 78 I 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 79 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 D 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 81 V 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 R 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 84 V 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 85 V 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 86 L 0.001 0.001 0.002 0.001 0.001 0.984 0.001 0.001 0.001 0.001 0.012 0.001 0.001 87 L 0.001 0.001 0.005 0.001 0.004 0.966 0.001 0.001 0.001 0.002 0.022 0.001 0.001 88 T 0.001 0.001 0.019 0.001 0.017 0.845 0.001 0.001 0.001 0.010 0.108 0.001 0.001 89 S 0.001 0.006 0.041 0.001 0.025 0.575 0.001 0.001 0.002 0.027 0.322 0.001 0.001 90 G 0.001 0.007 0.098 0.001 0.021 0.499 0.001 0.001 0.002 0.082 0.289 0.001 0.001 91 M 0.001 0.003 0.190 0.001 0.008 0.689 0.001 0.001 0.001 0.077 0.032 0.001 0.001 92 P 0.001 0.001 0.016 0.001 0.033 0.907 0.001 0.001 0.001 0.008 0.035 0.001 0.001 93 A 0.001 0.001 0.012 0.001 0.026 0.940 0.001 0.001 0.001 0.006 0.016 0.001 0.001 94 F 0.001 0.001 0.004 0.001 0.009 0.976 0.001 0.001 0.001 0.002 0.009 0.001 0.001 95 T 0.001 0.001 0.004 0.001 0.005 0.969 0.001 0.001 0.001 0.005 0.016 0.001 0.001 96 K 0.001 0.001 0.006 0.001 0.002 0.963 0.001 0.001 0.001 0.003 0.025 0.001 0.001 97 A 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 98 M 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 99 K 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.001 100 I 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 101 L 0.001 0.001 0.001 0.001 0.004 0.972 0.001 0.001 0.001 0.001 0.022 0.001 0.001 102 E 0.001 0.001 0.002 0.001 0.009 0.871 0.001 0.001 0.001 0.001 0.117 0.001 0.001 103 K 0.001 0.001 0.010 0.001 0.020 0.726 0.001 0.001 0.001 0.006 0.239 0.001 0.001 104 L 0.001 0.002 0.621 0.001 0.010 0.126 0.001 0.001 0.001 0.216 0.023 0.001 0.001