# TARGET T0408 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0408.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 332 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.026 0.003 0.004 0.021 0.204 0.742 2 K 0.103 0.050 0.010 0.066 0.158 0.613 3 N 0.130 0.034 0.011 0.097 0.163 0.566 4 E 0.099 0.009 0.049 0.242 0.263 0.339 5 V 0.055 0.013 0.059 0.285 0.249 0.340 6 F 0.064 0.032 0.067 0.313 0.222 0.302 7 F 0.042 0.010 0.036 0.385 0.180 0.347 8 G 0.019 0.002 0.031 0.676 0.115 0.157 9 E 0.013 0.003 0.043 0.857 0.055 0.030 10 G 0.008 0.001 0.026 0.912 0.034 0.019 11 M 0.008 0.001 0.013 0.905 0.039 0.034 12 K 0.005 0.001 0.010 0.909 0.038 0.038 13 V 0.003 0.002 0.010 0.923 0.035 0.028 14 V 0.002 0.001 0.014 0.918 0.036 0.029 15 K 0.002 0.001 0.075 0.787 0.092 0.044 16 E 0.001 0.001 0.064 0.773 0.112 0.048 17 K 0.001 0.001 0.039 0.745 0.097 0.117 18 Y 0.001 0.001 0.013 0.297 0.140 0.548 19 P 0.001 0.001 0.029 0.777 0.075 0.118 20 D 0.001 0.001 0.028 0.888 0.048 0.033 21 L 0.001 0.001 0.019 0.947 0.021 0.011 22 Y 0.002 0.001 0.009 0.972 0.011 0.007 23 D 0.001 0.001 0.005 0.980 0.009 0.004 24 I 0.001 0.001 0.004 0.980 0.009 0.006 25 I 0.001 0.001 0.002 0.978 0.008 0.010 26 V 0.002 0.001 0.004 0.974 0.010 0.010 27 K 0.002 0.001 0.006 0.963 0.015 0.014 28 L 0.004 0.001 0.009 0.937 0.023 0.027 29 N 0.007 0.002 0.023 0.846 0.055 0.067 30 D 0.011 0.001 0.029 0.770 0.093 0.096 31 T 0.029 0.004 0.039 0.692 0.112 0.125 32 V 0.083 0.013 0.046 0.542 0.164 0.152 33 F 0.123 0.017 0.042 0.410 0.191 0.216 34 T 0.065 0.014 0.046 0.269 0.279 0.327 35 G 0.019 0.005 0.120 0.103 0.528 0.225 36 K 0.010 0.003 0.082 0.030 0.575 0.300 37 T 0.010 0.015 0.060 0.020 0.513 0.383 38 L 0.010 0.034 0.011 0.018 0.339 0.588 39 D 0.004 0.007 0.002 0.016 0.153 0.818 40 Y 0.001 0.001 0.025 0.859 0.071 0.043 41 K 0.001 0.001 0.022 0.894 0.065 0.017 42 T 0.001 0.001 0.018 0.958 0.016 0.006 43 Q 0.001 0.001 0.005 0.985 0.005 0.005 44 K 0.001 0.001 0.004 0.987 0.003 0.005 45 L 0.001 0.001 0.003 0.996 0.001 0.001 46 I 0.001 0.001 0.001 0.999 0.001 0.001 47 A 0.001 0.001 0.001 0.998 0.001 0.001 48 I 0.001 0.001 0.001 0.999 0.001 0.001 49 G 0.001 0.001 0.001 0.999 0.001 0.001 50 I 0.001 0.001 0.001 0.997 0.001 0.001 51 V 0.001 0.001 0.001 0.994 0.004 0.001 52 A 0.001 0.001 0.003 0.987 0.006 0.003 53 S 0.001 0.001 0.005 0.980 0.009 0.005 54 R 0.001 0.001 0.007 0.913 0.032 0.047 55 C 0.002 0.002 0.005 0.158 0.156 0.677 56 D 0.003 0.006 0.005 0.122 0.209 0.655 57 E 0.001 0.001 0.010 0.800 0.118 0.070 58 V 0.001 0.001 0.009 0.893 0.072 0.025 59 A 0.001 0.001 0.008 0.956 0.021 0.012 60 I 0.002 0.001 0.004 0.978 0.006 0.010 61 E 0.001 0.001 0.002 0.993 0.002 0.003 62 K 0.001 0.001 0.003 0.994 0.002 0.001 63 Q 0.001 0.001 0.002 0.996 0.001 0.001 64 M 0.001 0.001 0.001 0.996 0.001 0.001 65 K 0.001 0.001 0.001 0.995 0.003 0.001 66 S 0.001 0.001 0.001 0.997 0.002 0.001 67 A 0.001 0.001 0.001 0.996 0.003 0.001 68 M 0.001 0.001 0.003 0.989 0.006 0.001 69 K 0.001 0.001 0.012 0.979 0.007 0.003 70 E 0.001 0.001 0.023 0.936 0.026 0.014 71 L 0.001 0.001 0.017 0.738 0.076 0.168 72 G 0.001 0.001 0.001 0.004 0.047 0.947 73 I 0.002 0.007 0.001 0.001 0.054 0.937 74 T 0.002 0.002 0.001 0.002 0.032 0.961 75 K 0.001 0.001 0.046 0.886 0.034 0.032 76 E 0.001 0.001 0.046 0.918 0.024 0.012 77 E 0.001 0.001 0.045 0.949 0.006 0.001 78 I 0.001 0.001 0.004 0.993 0.001 0.001 79 A 0.001 0.001 0.002 0.996 0.001 0.001 80 D 0.001 0.001 0.001 0.997 0.002 0.001 81 V 0.001 0.001 0.001 0.996 0.001 0.002 82 L 0.001 0.001 0.001 0.999 0.001 0.001 83 R 0.001 0.001 0.001 0.998 0.001 0.001 84 V 0.001 0.001 0.001 0.998 0.001 0.001 85 V 0.001 0.001 0.001 0.998 0.001 0.001 86 L 0.001 0.001 0.001 0.996 0.002 0.001 87 L 0.001 0.001 0.003 0.991 0.004 0.002 88 T 0.001 0.001 0.004 0.983 0.008 0.005 89 S 0.001 0.001 0.006 0.920 0.022 0.051 90 G 0.001 0.001 0.007 0.657 0.053 0.282 91 M 0.001 0.001 0.010 0.431 0.088 0.469 92 P 0.001 0.001 0.028 0.948 0.013 0.011 93 A 0.001 0.001 0.025 0.968 0.006 0.001 94 F 0.001 0.001 0.014 0.979 0.006 0.001 95 T 0.001 0.001 0.004 0.991 0.004 0.001 96 K 0.001 0.001 0.003 0.992 0.004 0.001 97 A 0.001 0.001 0.003 0.991 0.005 0.001 98 M 0.001 0.001 0.003 0.986 0.007 0.004 99 K 0.001 0.001 0.004 0.976 0.011 0.009 100 I 0.001 0.001 0.007 0.980 0.007 0.005 101 L 0.001 0.001 0.013 0.965 0.013 0.008 102 E 0.001 0.001 0.022 0.914 0.030 0.033 103 K 0.001 0.001 0.021 0.701 0.075 0.200 104 L 0.001 0.001 0.004 0.093 0.070 0.831