# TARGET T0408 # Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 7 (1 EBGHSTL ) # The input amino acid frequencies were determined from # alignment T0408.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 332 # Pos AA E B G H S T C 10N 1S 5N 5N 5N 5N 5N 5N 5N 1 M 0.007 0.003 0.002 0.008 0.011 0.005 0.963 2 K 0.090 0.074 0.011 0.078 0.037 0.037 0.673 3 N 0.060 0.037 0.020 0.144 0.127 0.051 0.562 4 E 0.020 0.007 0.091 0.412 0.065 0.156 0.249 5 V 0.018 0.002 0.109 0.439 0.078 0.271 0.083 6 F 0.015 0.012 0.106 0.543 0.065 0.167 0.093 7 F 0.012 0.012 0.021 0.685 0.082 0.040 0.149 8 G 0.002 0.001 0.013 0.931 0.012 0.022 0.020 9 E 0.001 0.001 0.013 0.949 0.006 0.024 0.006 10 G 0.001 0.001 0.013 0.959 0.003 0.020 0.004 11 M 0.001 0.001 0.008 0.970 0.003 0.013 0.004 12 K 0.001 0.001 0.012 0.957 0.003 0.023 0.004 13 V 0.001 0.001 0.019 0.932 0.003 0.042 0.004 14 V 0.001 0.001 0.024 0.911 0.009 0.046 0.008 15 K 0.001 0.001 0.039 0.866 0.011 0.076 0.007 16 E 0.001 0.001 0.049 0.766 0.022 0.141 0.020 17 K 0.001 0.001 0.029 0.742 0.076 0.106 0.045 18 Y 0.002 0.003 0.007 0.323 0.193 0.038 0.433 19 P 0.001 0.001 0.041 0.797 0.017 0.125 0.020 20 D 0.001 0.001 0.034 0.857 0.011 0.084 0.012 21 L 0.001 0.001 0.019 0.942 0.006 0.019 0.013 22 Y 0.001 0.001 0.003 0.980 0.004 0.005 0.006 23 D 0.003 0.001 0.003 0.983 0.002 0.006 0.004 24 I 0.002 0.001 0.003 0.984 0.002 0.006 0.003 25 I 0.002 0.001 0.002 0.986 0.002 0.006 0.002 26 V 0.002 0.001 0.002 0.972 0.003 0.017 0.003 27 K 0.002 0.001 0.003 0.924 0.004 0.062 0.005 28 L 0.004 0.002 0.006 0.836 0.018 0.104 0.031 29 N 0.009 0.004 0.021 0.676 0.039 0.188 0.063 30 D 0.019 0.003 0.059 0.560 0.099 0.154 0.106 31 T 0.031 0.010 0.097 0.552 0.087 0.120 0.103 32 V 0.057 0.023 0.079 0.489 0.092 0.120 0.140 33 F 0.053 0.017 0.049 0.388 0.123 0.203 0.166 34 T 0.027 0.011 0.034 0.180 0.238 0.208 0.302 35 G 0.010 0.005 0.057 0.094 0.343 0.229 0.262 36 K 0.007 0.005 0.079 0.060 0.269 0.313 0.267 37 T 0.008 0.027 0.108 0.059 0.164 0.201 0.433 38 L 0.005 0.019 0.032 0.083 0.239 0.052 0.570 39 D 0.002 0.003 0.002 0.088 0.126 0.012 0.765 40 Y 0.001 0.001 0.008 0.980 0.002 0.009 0.001 41 K 0.001 0.001 0.003 0.987 0.001 0.008 0.001 42 T 0.001 0.001 0.002 0.993 0.001 0.004 0.001 43 Q 0.001 0.001 0.001 0.997 0.001 0.001 0.001 44 K 0.001 0.001 0.001 0.997 0.001 0.002 0.001 45 L 0.001 0.001 0.001 0.998 0.001 0.002 0.001 46 I 0.001 0.001 0.001 0.999 0.001 0.001 0.001 47 A 0.001 0.001 0.001 0.998 0.001 0.002 0.001 48 I 0.001 0.001 0.001 0.998 0.001 0.001 0.001 49 G 0.001 0.001 0.001 0.999 0.001 0.001 0.001 50 I 0.001 0.001 0.001 0.999 0.001 0.001 0.001 51 V 0.001 0.001 0.001 0.998 0.001 0.001 0.001 52 A 0.001 0.001 0.001 0.985 0.001 0.013 0.001 53 S 0.001 0.001 0.003 0.917 0.002 0.076 0.002 54 R 0.001 0.001 0.004 0.471 0.012 0.506 0.007 55 C 0.001 0.002 0.003 0.194 0.152 0.524 0.125 56 D 0.001 0.004 0.001 0.043 0.125 0.015 0.811 57 E 0.001 0.001 0.036 0.860 0.036 0.042 0.025 58 V 0.001 0.001 0.035 0.905 0.014 0.039 0.007 59 A 0.001 0.001 0.019 0.948 0.006 0.019 0.006 60 I 0.001 0.001 0.003 0.984 0.002 0.006 0.005 61 E 0.001 0.001 0.001 0.991 0.001 0.003 0.003 62 K 0.001 0.001 0.001 0.992 0.001 0.004 0.001 63 Q 0.001 0.001 0.001 0.992 0.001 0.005 0.001 64 M 0.001 0.001 0.001 0.995 0.001 0.003 0.001 65 K 0.001 0.001 0.001 0.997 0.001 0.002 0.001 66 S 0.001 0.001 0.001 0.996 0.001 0.002 0.001 67 A 0.001 0.001 0.001 0.996 0.001 0.003 0.001 68 M 0.001 0.001 0.001 0.994 0.001 0.003 0.001 69 K 0.001 0.001 0.003 0.987 0.001 0.008 0.001 70 E 0.001 0.001 0.011 0.851 0.005 0.130 0.002 71 L 0.001 0.001 0.007 0.108 0.007 0.876 0.002 72 G 0.001 0.001 0.003 0.003 0.014 0.959 0.021 73 I 0.002 0.009 0.001 0.001 0.091 0.004 0.893 74 T 0.002 0.007 0.001 0.001 0.036 0.001 0.952 75 K 0.001 0.001 0.027 0.916 0.027 0.017 0.012 76 E 0.001 0.001 0.010 0.970 0.005 0.011 0.003 77 E 0.001 0.001 0.004 0.988 0.001 0.005 0.002 78 I 0.001 0.001 0.001 0.995 0.001 0.003 0.001 79 A 0.001 0.001 0.001 0.995 0.001 0.003 0.001 80 D 0.001 0.001 0.001 0.995 0.001 0.004 0.001 81 V 0.001 0.001 0.001 0.996 0.001 0.002 0.001 82 L 0.001 0.001 0.001 0.997 0.001 0.002 0.001 83 R 0.001 0.001 0.001 0.997 0.001 0.003 0.001 84 V 0.001 0.001 0.001 0.998 0.001 0.001 0.001 85 V 0.001 0.001 0.001 0.999 0.001 0.001 0.001 86 L 0.001 0.001 0.001 0.997 0.001 0.002 0.001 87 L 0.001 0.001 0.001 0.986 0.001 0.012 0.001 88 T 0.001 0.001 0.002 0.933 0.001 0.062 0.001 89 S 0.001 0.001 0.003 0.700 0.021 0.267 0.009 90 G 0.001 0.002 0.003 0.494 0.151 0.202 0.146 91 M 0.001 0.001 0.006 0.887 0.046 0.016 0.044 92 P 0.001 0.001 0.009 0.979 0.003 0.006 0.002 93 A 0.001 0.001 0.009 0.980 0.001 0.008 0.001 94 F 0.001 0.001 0.003 0.991 0.001 0.004 0.001 95 T 0.001 0.001 0.001 0.993 0.002 0.003 0.001 96 K 0.001 0.001 0.001 0.991 0.001 0.005 0.002 97 A 0.001 0.001 0.001 0.991 0.001 0.006 0.001 98 M 0.001 0.001 0.001 0.988 0.002 0.006 0.002 99 K 0.001 0.001 0.002 0.974 0.003 0.018 0.002 100 I 0.001 0.001 0.004 0.940 0.003 0.048 0.004 101 L 0.001 0.001 0.020 0.865 0.011 0.077 0.025 102 E 0.003 0.001 0.043 0.635 0.022 0.271 0.026 103 K 0.004 0.004 0.064 0.408 0.007 0.418 0.095 104 L 0.001 0.001 0.003 0.024 0.016 0.005 0.951