PFRMAT SS
TARGET T0408
AUTHOR SAM-T02-server
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0408.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 332
METHOD
MODEL 1
M C 0.963
K C 0.673
N C 0.562
E H 0.412
V H 0.439
F H 0.543
F H 0.685
G H 0.931
E H 0.949
G H 0.959
M H 0.970
K H 0.957
V H 0.932
V H 0.911
K H 0.866
E H 0.766
K H 0.742
Y C 0.433
P H 0.797
D H 0.857
L H 0.942
Y H 0.980
D H 0.983
I H 0.984
I H 0.986
V H 0.972
K H 0.924
L H 0.836
N H 0.676
D H 0.560
T H 0.552
V H 0.489
F H 0.388
T C 0.302
G S 0.343
K T 0.313
T C 0.433
L C 0.570
D C 0.765
Y H 0.980
K H 0.987
T H 0.993
Q H 0.997
K H 0.997
L H 0.998
I H 0.999
A H 0.998
I H 0.998
G H 0.999
I H 0.999
V H 0.998
A H 0.985
S H 0.917
R T 0.506
C T 0.524
D C 0.811
E H 0.860
V H 0.905
A H 0.948
I H 0.984
E H 0.991
K H 0.992
Q H 0.992
M H 0.995
K H 0.997
S H 0.996
A H 0.996
M H 0.994
K H 0.987
E H 0.851
L T 0.876
G T 0.959
I C 0.893
T C 0.952
K H 0.916
E H 0.970
E H 0.988
I H 0.995
A H 0.995
D H 0.995
V H 0.996
L H 0.997
R H 0.997
V H 0.998
V H 0.999
L H 0.997
L H 0.986
T H 0.933
S H 0.700
G H 0.494
M H 0.887
P H 0.979
A H 0.980
F H 0.991
T H 0.993
K H 0.991
A H 0.991
M H 0.988
K H 0.974
I H 0.940
L H 0.865
E H 0.635
K T 0.418
L C 0.951
END