Best Alignments for T0406

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2qe9A/T0406-2qe9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2qe9A/T0406-2qe9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.5788e-157.74e-51
2ou6A/T0406-2ou6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ou6A/T0406-2ou6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.4948e-128.05e-51
2hkvA/T0406-2hkvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hkvA/T0406-2hkvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9146e-112.27e-39
2p1aA/T0406-2p1aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2p1aA/T0406-2p1aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.0649e-111.38e-40
1rxqA/T0406-1rxqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rxqA/T0406-1rxqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6599e-106.95e-51 a.213.1.1
2f22A/T0406-2f22A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f22A/T0406-2f22A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.6688e-101.32e-39 a.213.1.2
2qnlA/T0406-2qnlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2qnlA/T0406-2qnlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6399e-095.87e-43
2yqyA/T0406-2yqyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2yqyA/T0406-2yqyA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0112e-063.44e-39
2rd9A/T0406-2rd9A-t04-global-adpstyle1.a2m 2rd9A/T0406-2rd9A-t04-global-adpstyle1.al 2.0368e-043.98e-20
2nsfA/T0406-2nsfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2nsfA/T0406-2nsfA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.2317e-032.92e-30

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001