Best Alignments for T0406

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2qe9A/T0406-2qe9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2qe9A/T0406-2qe9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9789e-157.74e-51
2f22A/T0406-2f22A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2f22A/T0406-2f22A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.5545e-121.93e-36 a.213.1.2
2p1aA/T0406-2p1aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2p1aA/T0406-2p1aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.7941e-115.90e-34
2qnlA/T0406-2qnlA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2qnlA/T0406-2qnlA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1482e-095.10e-39
2hkvA/T0406-2hkvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2hkvA/T0406-2hkvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4508e-091.85e-31
2ou6A/T0406-2ou6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ou6A/T0406-2ou6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1881e-091.86e-36
1rxqA/T0406-1rxqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1rxqA/T0406-1rxqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.8244e-076.88e-30 a.213.1.1
2yqyA/T0406-2yqyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2yqyA/T0406-2yqyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9205e-042.21e-22
2nsfA/T0406-2nsfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2nsfA/T0406-2nsfA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.6081e-028.37e-24
2q1zA/T0406-2q1zA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2q1zA/T0406-2q1zA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9123e+002.74e-11

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001