# TARGET T0406 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0406.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 771 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.009 0.005 0.006 0.053 0.080 0.846 2 Y 0.019 0.012 0.015 0.391 0.102 0.461 3 Q 0.018 0.017 0.025 0.378 0.170 0.393 4 T 0.008 0.007 0.051 0.756 0.075 0.102 5 I 0.006 0.001 0.029 0.913 0.023 0.027 6 E 0.003 0.001 0.021 0.947 0.017 0.012 7 G 0.002 0.001 0.010 0.972 0.009 0.007 8 F 0.002 0.001 0.009 0.974 0.008 0.006 9 L 0.002 0.001 0.012 0.970 0.010 0.006 10 Q 0.002 0.001 0.013 0.964 0.013 0.007 11 S 0.002 0.001 0.013 0.955 0.015 0.014 12 W 0.002 0.001 0.017 0.919 0.027 0.034 13 T 0.002 0.001 0.022 0.877 0.051 0.048 14 Y 0.002 0.001 0.022 0.859 0.056 0.060 15 E 0.002 0.002 0.010 0.824 0.050 0.112 16 T 0.001 0.001 0.005 0.933 0.022 0.039 17 E 0.001 0.001 0.006 0.976 0.009 0.009 18 S 0.001 0.001 0.005 0.986 0.005 0.004 19 T 0.001 0.001 0.004 0.983 0.005 0.007 20 Q 0.001 0.001 0.004 0.989 0.004 0.003 21 K 0.001 0.001 0.006 0.980 0.007 0.004 22 M 0.001 0.001 0.007 0.975 0.009 0.008 23 L 0.003 0.002 0.030 0.906 0.043 0.018 24 D 0.004 0.001 0.057 0.710 0.134 0.093 25 V 0.012 0.004 0.044 0.161 0.205 0.573 26 L 0.019 0.028 0.004 0.028 0.155 0.766 27 T 0.021 0.011 0.002 0.009 0.052 0.905 28 D 0.001 0.001 0.181 0.774 0.024 0.019 29 E 0.005 0.001 0.223 0.729 0.033 0.009 30 S 0.010 0.002 0.192 0.748 0.041 0.007 31 L 0.031 0.008 0.047 0.790 0.064 0.060 32 S 0.014 0.004 0.029 0.744 0.096 0.112 33 Q 0.053 0.015 0.020 0.279 0.168 0.464 34 E 0.046 0.024 0.009 0.075 0.141 0.706 35 I 0.025 0.069 0.012 0.027 0.143 0.725 36 A 0.014 0.028 0.008 0.008 0.690 0.252 37 P 0.005 0.007 0.015 0.010 0.816 0.146 38 G 0.004 0.002 0.017 0.010 0.802 0.166 39 H 0.040 0.048 0.017 0.021 0.670 0.205 40 W 0.056 0.049 0.003 0.061 0.149 0.683 41 T 0.085 0.059 0.002 0.272 0.043 0.538 42 L 0.002 0.001 0.001 0.992 0.001 0.003 43 G 0.001 0.001 0.001 0.996 0.001 0.001 44 R 0.001 0.001 0.001 0.997 0.001 0.001 45 V 0.001 0.001 0.001 0.998 0.001 0.001 46 A 0.001 0.001 0.001 0.998 0.001 0.001 47 W 0.001 0.001 0.001 0.997 0.001 0.001 48 H 0.001 0.001 0.002 0.996 0.001 0.001 49 I 0.001 0.001 0.003 0.995 0.001 0.001 50 V 0.001 0.001 0.005 0.994 0.001 0.001 51 T 0.001 0.001 0.004 0.993 0.001 0.002 52 A 0.001 0.001 0.002 0.993 0.001 0.004 53 I 0.001 0.001 0.002 0.992 0.002 0.003 54 P 0.001 0.001 0.004 0.992 0.003 0.001 55 V 0.001 0.001 0.006 0.988 0.005 0.001 56 I 0.001 0.001 0.005 0.989 0.004 0.001 57 L 0.001 0.001 0.007 0.982 0.008 0.002 58 S 0.001 0.001 0.006 0.972 0.014 0.007 59 G 0.001 0.001 0.013 0.766 0.068 0.151 60 T 0.003 0.014 0.021 0.416 0.201 0.345 61 G 0.007 0.006 0.018 0.040 0.272 0.657 62 L 0.011 0.005 0.028 0.016 0.306 0.634 63 K 0.040 0.018 0.048 0.019 0.322 0.553 64 F 0.054 0.028 0.053 0.028 0.316 0.522 65 E 0.040 0.025 0.025 0.027 0.322 0.561 66 G 0.043 0.019 0.027 0.023 0.292 0.596 67 E 0.076 0.039 0.037 0.040 0.271 0.537 68 T 0.077 0.055 0.077 0.043 0.304 0.444 69 K 0.068 0.033 0.068 0.036 0.341 0.455 70 D 0.055 0.022 0.061 0.028 0.390 0.444 71 Y 0.031 0.012 0.019 0.016 0.370 0.552 72 P 0.029 0.019 0.018 0.012 0.370 0.553 73 V 0.016 0.017 0.010 0.009 0.295 0.654 74 P 0.011 0.015 0.009 0.008 0.246 0.710 75 T 0.009 0.024 0.007 0.015 0.192 0.754 76 S 0.006 0.008 0.004 0.046 0.094 0.843 77 A 0.001 0.001 0.010 0.982 0.004 0.004 78 K 0.001 0.001 0.006 0.991 0.002 0.001 79 T 0.001 0.001 0.005 0.991 0.003 0.001 80 I 0.001 0.001 0.002 0.995 0.001 0.002 81 A 0.001 0.001 0.001 0.996 0.001 0.001 82 D 0.001 0.001 0.001 0.996 0.001 0.001 83 G 0.001 0.001 0.001 0.993 0.003 0.003 84 Y 0.001 0.001 0.001 0.995 0.002 0.002 85 R 0.001 0.001 0.002 0.995 0.002 0.001 86 K 0.001 0.001 0.001 0.995 0.001 0.002 87 V 0.001 0.001 0.001 0.995 0.001 0.003 88 N 0.001 0.001 0.001 0.990 0.002 0.006 89 T 0.001 0.001 0.001 0.997 0.001 0.001 90 A 0.001 0.001 0.001 0.998 0.001 0.001 91 F 0.001 0.001 0.001 0.999 0.001 0.001 92 V 0.001 0.001 0.001 0.999 0.001 0.001 93 E 0.001 0.001 0.001 0.998 0.001 0.001 94 A 0.001 0.001 0.002 0.993 0.003 0.002 95 L 0.001 0.001 0.003 0.975 0.008 0.014 96 Q 0.001 0.001 0.014 0.856 0.054 0.073 97 S 0.003 0.002 0.019 0.364 0.169 0.443 98 E 0.007 0.004 0.012 0.119 0.178 0.679 99 W 0.016 0.021 0.005 0.016 0.186 0.757 100 T 0.027 0.019 0.004 0.024 0.120 0.806 101 D 0.002 0.001 0.224 0.704 0.046 0.025 102 K 0.003 0.001 0.251 0.687 0.047 0.013 103 D 0.008 0.002 0.257 0.658 0.065 0.010 104 L 0.022 0.007 0.072 0.739 0.085 0.077 105 T 0.027 0.005 0.036 0.739 0.084 0.109 106 T 0.068 0.014 0.031 0.509 0.169 0.208 107 I 0.096 0.022 0.017 0.397 0.153 0.314 108 N 0.130 0.056 0.027 0.156 0.220 0.411 109 D 0.127 0.030 0.040 0.068 0.355 0.381 110 F 0.080 0.025 0.061 0.056 0.608 0.171 111 F 0.035 0.013 0.023 0.048 0.668 0.212 112 G 0.019 0.006 0.011 0.016 0.623 0.325 113 R 0.080 0.024 0.004 0.010 0.376 0.506 114 P 0.103 0.036 0.003 0.008 0.132 0.717 115 M 0.074 0.087 0.002 0.015 0.125 0.697 116 P 0.023 0.009 0.001 0.016 0.047 0.904 117 N 0.001 0.001 0.007 0.982 0.003 0.007 118 S 0.001 0.001 0.003 0.994 0.001 0.001 119 I 0.001 0.001 0.003 0.995 0.001 0.001 120 F 0.001 0.001 0.001 0.996 0.001 0.001 121 L 0.001 0.001 0.002 0.995 0.001 0.001 122 M 0.001 0.001 0.003 0.993 0.002 0.001 123 T 0.001 0.001 0.003 0.990 0.004 0.001 124 L 0.001 0.001 0.005 0.985 0.006 0.003 125 I 0.003 0.001 0.011 0.963 0.014 0.009 126 N 0.003 0.001 0.008 0.924 0.024 0.039 127 H 0.002 0.002 0.019 0.882 0.033 0.062 128 Q 0.002 0.001 0.032 0.876 0.044 0.045 129 N 0.002 0.002 0.049 0.856 0.056 0.036 130 H 0.003 0.004 0.040 0.832 0.062 0.059 131 H 0.003 0.002 0.020 0.880 0.032 0.064 132 R 0.001 0.001 0.005 0.975 0.008 0.011 133 G 0.001 0.001 0.002 0.991 0.003 0.003 134 Q 0.001 0.001 0.001 0.999 0.001 0.001 135 M 0.001 0.001 0.001 0.999 0.001 0.001 136 T 0.001 0.001 0.001 0.999 0.001 0.001 137 V 0.001 0.001 0.001 0.999 0.001 0.001 138 L 0.001 0.001 0.001 0.999 0.001 0.001 139 M 0.001 0.001 0.001 0.999 0.001 0.001 140 R 0.001 0.001 0.001 0.998 0.001 0.001 141 Q 0.001 0.001 0.002 0.994 0.001 0.003 142 A 0.001 0.001 0.003 0.946 0.008 0.043 143 G 0.001 0.001 0.001 0.007 0.026 0.965 144 L 0.003 0.007 0.001 0.001 0.060 0.929 145 T 0.024 0.029 0.003 0.001 0.140 0.803 146 V 0.030 0.029 0.012 0.003 0.254 0.672 147 P 0.031 0.022 0.038 0.008 0.407 0.495 148 G 0.040 0.017 0.085 0.017 0.475 0.366 149 V 0.059 0.037 0.066 0.044 0.465 0.329 150 Y 0.047 0.031 0.041 0.059 0.445 0.376 151 G 0.028 0.015 0.022 0.063 0.386 0.486 152 P 0.021 0.021 0.047 0.113 0.347 0.450 153 A 0.019 0.035 0.065 0.241 0.247 0.393 154 K 0.007 0.006 0.115 0.674 0.115 0.083 155 E 0.004 0.001 0.122 0.782 0.066 0.025 156 E 0.005 0.002 0.082 0.857 0.040 0.014 157 W 0.007 0.003 0.064 0.864 0.041 0.020 158 A 0.006 0.002 0.045 0.890 0.035 0.022 159 T 0.004 0.002 0.043 0.889 0.037 0.025 160 A 0.004 0.002 0.040 0.853 0.054 0.047 161 G 0.007 0.003 0.070 0.608 0.172 0.139 162 M 0.011 0.009 0.057 0.393 0.257 0.274 163 E 0.017 0.010 0.056 0.337 0.261 0.319 164 A 0.013 0.008 0.032 0.048 0.389 0.511 165 P 0.006 0.005 0.120 0.065 0.333 0.471 166 K 0.014 0.015 0.106 0.073 0.302 0.490 167 M 0.015 0.012 0.029 0.026 0.227 0.690