# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ou6A 190 2.73e-13 1rxqA 178 6.89e-13 a.213.1.1 105118 2qe9A 178 2.07e-11 2hkvA 149 7.27e-10 2qnlA 162 4.51e-08 2p1aA 154 1.77e-07 2f22A 144 2.96e-07 a.213.1.2 132795 2yqyA 169 3.43e-06 2nsfA 261 2.48e-03 2jo7A 224 1.56e-01 2or0A 414 5.34e-01 1j99A 293 8.48e-01 c.37.1.5 71618 3cklA 298 1.05e+00 1ddzA 496 1.27e+00 1ddzA c.53.2.1,c.53.2.1 33372,33373 1vjtA 483 1.44e+00 c.2.1.5,d.162.1.2 100833,100834 2v9kA 530 1.72e+00 1tbbA 332 2.23e+00 a.211.1.2 106741 1y2kA 349 2.48e+00 a.211.1.2 122571 1g3mA 294 3.10e+00 c.37.1.5 83268 1pv1A 299 3.55e+00 c.69.1.34 111639 1o5hA 214 3.63e+00 a.191.1.1 92497 2d0tA 406 3.73e+00 a.266.1.2 131093 2c82A 413 3.79e+00 2hdyA 440 3.86e+00 1f0jA 377 4.28e+00 1f0jA a.211.1.2 19346 2ivfB 352 4.53e+00 1t0bA 252 5.29e+00 c.23.16.6 106199 2dvzA 314 5.51e+00 2ch4A 320 5.74e+00 b.40.7.1,d.122.1.3 130447,130448 2fb9A 322 6.43e+00 1f5mA 180 6.52e+00 1f5mB d.110.2.1 40895 2gwhA 298 6.59e+00 1r2rA 248 7.03e+00 c.1.1.1 96875 1snnA 227 8.10e+00 d.115.1.2 105821 1bn7A 294 8.29e+00 1bn6A c.69.1.8 34677 3bcxA 437 8.56e+00 3bfxA 296 8.61e+00 2r4vA 247 8.69e+00 2gasA 307 1.04e+01 2au5A 139 1.07e+01 a.244.1.1 127322 1wy5A 317 1.09e+01 c.26.2.5,d.229.1.1 121428,121429 1qz9A 416 1.19e+01 c.67.1.3 96621 1nmsA 249 1.20e+01 c.17.1.1 85879 2ex0A 399 1.21e+01 c.87.1.9 132494 3ck6A 252 1.22e+01 1r6uA 437 1.22e+01 c.26.1.1 97163 1ozhA 566 1.23e+01 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1kb9D 246 1.23e+01 a.3.1.3,f.23.11.1 77317,77318 1ezvD 245 1.26e+01 1be3D a.3.1.3,f.23.11.1 59546,59547 2c2uA 207 1.30e+01 2nybA 192 1.32e+01 a.2.11.1,d.44.1.1 138804,138805 2g0wA 296 1.32e+01 c.1.15.4 134503 1tph1 247 1.34e+01 1amk 1x1nA 524 1.34e+01 c.1.8.1 121593 2aheA 267 1.35e+01 1iscA 192 1.39e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 2z0dA 357 1.39e+01 1jipA 403 1.41e+01 a.104.1.1 66748 2ag6A 314 1.47e+01 1vkkA 154 1.49e+01 d.109.1.2 108669 1cf2O 337 1.53e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1f4lA 551 1.55e+01 1qqtA a.27.1.1,c.26.1.1,g.41.1.1 59648,59649,59650 2pulA 397 1.60e+01 1uerA 191 1.61e+01 a.2.11.1,d.44.1.1 107790,107791 2f4lA 297 1.67e+01 b.23.3.1 132927 2q3mA 326 1.67e+01 c.37.1.5 139795 2i6eA 301 1.74e+01 1z8oA 404 1.76e+01 a.104.1.1 124722 1rz4A 226 1.77e+01 a.4.5.53,a.118.1.18 105131,105132 3bhcA 249 1.83e+01 1yqdA 366 1.83e+01 1jl3A 139 1.88e+01 c.44.1.1 66826 1uesA 191 1.89e+01 a.2.11.1,d.44.1.1 107798,107799 2p0lA 288 1.92e+01 2q0tA 263 2.03e+01 2bs9A 503 2.05e+01 b.71.1.2,c.1.8.3 129062,129063 2bfgA 503 2.09e+01 b.71.1.2,c.1.8.3 128423,128424 1fmjA 351 2.10e+01 c.37.1.5 59879 1pfvA 551 2.16e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1qycA 308 2.22e+01 c.2.1.2 96581 1vj1A 363 2.24e+01 b.35.1.2,c.2.1.1 100794,100795 1fvrA 327 2.24e+01 d.144.1.7 60047 1n3lA 372 2.31e+01 c.26.1.1 79966 1v6fA 151 2.44e+01 d.109.1.2 108395 2fl7A 232 2.57e+01 1pieA 419 2.57e+01 d.14.1.5,d.58.26.7 94706,94707 3caiA 406 2.59e+01 2e1vA 454 2.61e+01 1jsdB 176 2.65e+01 h.3.1.1 63259 2hvgA 482 2.66e+01 1p9bA 442 2.76e+01 c.37.1.10 94385 1v5xA 203 2.77e+01 c.1.2.4 100377 2iqhA 499 2.78e+01 1c96A 753 2.81e+01 1amj c.8.2.1,c.83.1.1 30727,35403 2r6fA 972 2.83e+01 1hs6A 611 2.92e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 2bduA 297 2.94e+01 2oo3A 283 3.18e+01 1li5A 461 3.18e+01 a.27.1.1,c.26.1.1 73912,73913 2a8mA 420 3.27e+01 1r0kA 388 3.28e+01 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1ehyA 294 3.48e+01 1ehyA c.69.1.11 34693 1eupA 403 3.58e+01 1rom a.104.1.1 18967 2zc8A 369 3.58e+01 1zesA 125 3.64e+01 c.23.1.1 124994 1jcfA 344 3.64e+01 c.55.1.1,c.55.1.1 62878,62879 2g09A 297 3.65e+01 2cybA 323 3.72e+01 2anxA 146 3.75e+01 1fwxA 595 3.81e+01 b.6.1.4,b.69.3.1 60069,60070 1rkuA 206 3.96e+01 c.108.1.11 97627 1tyhA 248 4.13e+01 a.132.1.3 107458 1l9cA 389 4.14e+01 c.3.1.2,d.16.1.3 77815,77816 2olrA 540 4.20e+01 c.91.1.1,c.109.1.1 139140,139141 1e6pA 499 4.25e+01 1e15A b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 2f5xA 312 4.27e+01 2au7A 175 4.29e+01 1z2zA 446 4.29e+01 1knvA 293 4.31e+01 c.52.1.7 68707 3cjeA 167 4.31e+01 2iqcA 210 4.32e+01 2qcxA 263 4.33e+01 1a0fA 201 4.35e+01 1a0fA a.45.1.1,c.47.1.5 17737,33031 1n2aA 201 4.38e+01 a.45.1.1,c.47.1.5 91553,91554 2gz4A 207 4.47e+01 2ip1A 432 4.47e+01 2h8gA 267 4.49e+01 2arhA 203 4.49e+01 d.108.1.9 127197 1rfmA 344 4.49e+01 c.122.1.1 97385 1ckiA 317 4.51e+01 1csn d.144.1.7 41660 3choA 610 4.54e+01 2ex3B 264 4.61e+01 a.263.1.1 132500 1ckmA 330 4.63e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1r26A 125 4.76e+01 c.47.1.1 96847 2a8jA 420 4.79e+01 1eemA 241 4.79e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 2okxA 956 4.81e+01 3bdzA 397 4.84e+01 1y8aA 332 4.87e+01 3be4A 217 4.87e+01 2ivxA 257 4.89e+01 1a4pA 96 5.02e+01 1b4cA a.39.1.2 17176 1qhfA 240 5.03e+01 1qhfA c.60.1.1 33960 2javA 279 5.06e+01 d.144.1.7 138243 1qpoA 284 5.07e+01 1qpoA c.1.17.1,d.41.2.1 29561,38597 1ohvA 472 5.08e+01 c.67.1.4 93031 1goiA 499 5.10e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 2qniA 219 5.18e+01 1g0uL 241 5.27e+01 d.153.1.4 41894 3bwvA 180 5.33e+01 1s69A 124 5.35e+01 a.1.1.1 105305 1vsrA 136 5.37e+01 1vsrA c.52.1.15 33332 1r0pA 312 5.43e+01 d.144.1.7 96734 2ouiA 360 5.47e+01 2h1rA 299 5.66e+01 2dr1A 386 5.68e+01 1ew2A 513 5.70e+01 1b8jA c.76.1.1 59525 2e9lA 469 5.75e+01 2vj8A 611 5.76e+01 1ijbA 202 5.80e+01 c.62.1.1 71229 1pv9A 348 5.81e+01 c.55.2.1,d.127.1.1 95157,95158 1yvwA 115 5.85e+01 a.204.1.4 124122 2b5tI 432 5.86e+01 e.1.1.1 127905 1fnsA 196 5.89e+01 1auq c.62.1.1 34136 1zedA 484 5.92e+01 c.76.1.1 124980 1qpcA 279 5.97e+01 1fgkA d.144.1.7 41685 1j3gA 187 6.12e+01 d.118.1.1 77075 1ks8A 433 6.17e+01 a.102.1.2 77519 1p0fA 373 6.17e+01 b.35.1.2,c.2.1.1 87642,87643 1q1fA 151 6.26e+01 a.1.1.2 104476 2ar0A 541 6.31e+01 c.66.1.45 127185 2a8lA 420 6.37e+01 1vzoA 355 6.38e+01 d.144.1.7 108971 1i40A 175 6.48e+01 b.40.5.1 66024 1px5A 349 6.57e+01 a.160.1.2,d.218.1.6 95277,95278 2qgaB 465 6.65e+01 1gcuA 295 6.67e+01 1gcuA c.2.1.3,d.81.1.4 30063,39978 1k38A 254 6.80e+01 e.3.1.1 84303 1bsmA 201 6.88e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 2ousA 331 6.92e+01 1yz7A 188 7.07e+01 1jf8A 131 7.13e+01 c.44.1.1 66621 2herA 368 7.20e+01 1aquA 297 7.22e+01 1aquA c.37.1.5 31942 1ufmA 84 7.30e+01 a.4.5.47 107816 2o8bB 1022 7.45e+01 1avmA 201 7.50e+01 1avmA a.2.11.1,d.44.1.1 15782,38745 1zh8A 340 7.54e+01 c.2.1.3,d.81.1.5 125077,125078 1dqaA 467 7.62e+01 1dqaA d.58.20.1,d.179.1.1 39364,42585 2c5aA 379 7.66e+01 c.2.1.2 129894 1xqoA 256 7.66e+01 a.96.1.6 115853 2cy7A 396 7.74e+01 1oj6A 151 7.83e+01 a.1.1.2 93088 2pfuA 99 7.86e+01 2oixA 186 7.90e+01 1t1uA 639 7.93e+01 c.43.1.3,c.43.1.3 119110,119111 1m2oA 768 7.99e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 2yr5A 721 7.99e+01