// This is based on the CASP7 cost function, with some updates
//	to take advantage of new features.
// Weighting is rather arbitrary.
// 	I reduced soft_clashes, to keep from tearing apart nearly
//	right packing.  It needs to be gradually increased.

ConstraintSet try1.sheets

SheetConstraint (T0405)A175 (T0405)D182	(T0405)L197 (T0405)H190	hbond (T0405)I176	1
SheetConstraint (T0405)A150 (T0405)R165	(T0405)D182 (T0405)R167	hbond (T0405)R153	1


ConstraintSet try1.helices

HelixConstraint (T0405)N2	(T0405)N15
HelixConstraint (T0405)G26	(T0405)G39
HelixConstraint (T0405)I38	(T0405)I43
HelixConstraint (T0405)A46	(T0405)G53
HelixConstraint (T0405)T58	(T0405)I63
HelixConstraint (T0405)I63	(T0405)Q73
HelixConstraint (T0405)E95	(T0405)D100
HelixConstraint (T0405)P115	(T0405)K122
HelixConstraint (T0405)R127	(T0405)G149
HelixConstraint (T0405)E221	(T0405)L231
HelixConstraint (T0405)S229	(T0405)H235
HelixConstraint (T0405)T244	(T0405)E259
HelixConstraint (T0405)S270	(T0405)Q282


ConstraintSet try2.sheets

SheetConstraint (T0405)A175 (T0405)D182	(T0405)L197 (T0405)H190	hbond (T0405)I176	1
SheetConstraint (T0405)A150 (T0405)R163	(T0405)D182 (T0405)Y169	hbond (T0405)R153	1
SheetConstraint (T0405)C75 (T0405)P81	(T0405)D108 (T0405)P102	hbond (T0405)S78	1
SheetConstraint (T0405)Y82 (T0405)L84	(T0405)K96 (T0405)T94	hbond (T0405)L84	1

ConstraintSet try2.helices

HelixConstraint (T0405)N2	(T0405)R14
HelixConstraint (T0405)N27	(T0405)E35
HelixConstraint (T0405)G39	(T0405)A46
HelixConstraint (T0405)V44	(T0405)K51
HelixConstraint (T0405)T58	(T0405)I63
HelixConstraint (T0405)P64	(T0405)Q73
HelixConstraint (T0405)E95	(T0405)D100
HelixConstraint (T0405)L114	(T0405)K122
HelixConstraint (T0405)K129	(T0405)H134
HelixConstraint (T0405)A132	(T0405)L148
HelixConstraint (T0405)D200	(T0405)Q211
HelixConstraint (T0405)G219	(T0405)L231
HelixConstraint (T0405)S229	(T0405)H235
HelixConstraint (T0405)T244	(T0405)E259
HelixConstraint (T0405)A272	(T0405)Q282


ConstraintSet add.strand

SheetConstraint P83	N88	F158	R153	hbond	V154


SetCost \
	try1.sheets 20 \
	try1.helices 10 \
	try2.sheets 20 \
	try2.helices 10 \
	add.strand 20 \
	align_constraints 50 \
	ehl2_constraints 10 \
	align_sheets 5 \
	pred_nb11_back 50 \
	pred_alpha_back 10 \
	pred_n_notor_back 5 \
	pred_bys_back 5 \
	pred_pb_back 3 \
	wet6.5 15  dry5 15 dry6.5 15 dry8 40 dry12 40 \
	phobic_fit 3 \
	sidechain 5 \
	n_ca_c	2 bad_peptide 5 \
	soft_clashes 100  backbone_clashes 10 \
	break 200  \
	hbond_geom 10 \
	hbond_geom_backbone 10 \
	hbond_geom_beta 20 \
	hbond_geom_beta_pair 90