Best Alignments for T0405

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2ii1A	6.8876e+00	2ii1A/T0405-2ii1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vpbA	2.3825e+01	1vpbA/T0405-1vpbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.283.1.1
1vl4A	3.7740e+01	1vl4A/T0405-1vl4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.283.1.1
2oa5A	4.0327e+01	2oa5A/T0405-2oa5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1xg7A	4.5986e+01	1xg7A/T0405-1xg7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.96.1.6
2f4lA	6.3563e+01	2f4lA/T0405-2f4lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.23.3.1
1bg6A	6.8531e+01	1bg6A/T0405-1bg6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.5 c.2.1.6
1gw5A	7.1274e+01	1gw5A/T0405-1gw5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.118.1.10
1ibrB	7.5888e+01	1ibrB/T0405-1ibrB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.118.1.1
2vglA	7.7468e+01	2vglA/T0405-2vglA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1amy	7.7759e+01	1amy/T0405-1amy-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1yzyA	8.0887e+01	1yzyA/T0405-1yzyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.146.1.1
1wzlA	8.1281e+01	1wzlA/T0405-1wzlA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.1.18.2 b.71.1.1 c.1.8.1
7taa	8.2104e+01	7taa/T0405-7taa-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jdc	8.2219e+01	1jdc/T0405-1jdc-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1fvuA	8.3708e+01	1fvuA/T0405-1fvuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.169.1.1
1avaA	8.5815e+01	1avaA/T0405-1avaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.71.1.1 c.1.8.1
1j34A	8.8637e+01	1j34A/T0405-1j34A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.169.1.1
2qipA	8.9010e+01	2qipA/T0405-2qipA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1v04A	9.0313e+01	1v04A/T0405-1v04A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.68.6.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001