Best Alignments for T0405

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2vglA	1.4747e+01	2vglA/T0405-2vglA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1jdc	1.8276e+01	1jdc/T0405-1jdc-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2oa5A	2.2080e+01	2oa5A/T0405-2oa5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ze0A	2.6438e+01	2ze0A/T0405-2ze0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ii1A	2.7785e+01	2ii1A/T0405-2ii1A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1amy	3.1014e+01	1amy/T0405-1amy-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gjwA	3.2884e+01	1gjwA/T0405-1gjwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1z6nA	3.3183e+01	1z6nA/T0405-1z6nA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pnwA	3.6901e+01	2pnwA/T0405-2pnwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vpbA	3.9715e+01	1vpbA/T0405-1vpbA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.283.1.1
1w63A	4.1194e+01	1w63A/T0405-1w63A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gcyA	4.1306e+01	1gcyA/T0405-1gcyA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.71.1.1 c.1.8.1
1hx0A	4.1566e+01	1hx0A/T0405-1hx0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vl4A	4.2934e+01	1vl4A/T0405-1vl4A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.283.1.1
1jdcA	4.3266e+01	1jdcA/T0405-1jdcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1avaA	4.5289e+01	1avaA/T0405-1avaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.71.1.1 c.1.8.1
1mxgA	4.9516e+01	1mxgA/T0405-1mxgA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1g0rA	4.9790e+01	1g0rA/T0405-1g0rA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.68.1.6
1gw5A	4.9951e+01	1gw5A/T0405-1gw5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
7taa	5.3985e+01	7taa/T0405-7taa-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001