# List of top-scoring protein chains for t2k-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g0rA	293	6.109	c.68.1.6	34532
1mc3A	296	8.848	c.68.1.6	78943
2ii1A	301	11.54		
1vl4A	447	14.12	d.283.1.1	108718
2ze0A	555	16.49		
2i8aA	252	21.37		
1vpbA	451	21.56	d.283.1.1	113950
1ji2A	585	31.94	b.1.18.2,b.71.1.1,c.1.8.1	71672,71673,71674
1wzlA	585	33.17	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1amy	403	36.32		
2hrdA	253	36.81		
1pmi	440	39.64		
1j5yA	187	41.01	a.4.5.1,d.94.2.1	71592,71593
1xg7A	250	42.67	a.96.1.6	115281
1h5rA	293	44.21	c.68.1.6	65623
1jykA	254	44.40	c.68.1.13	67458
1yexA	186	46.52	c.47.1.10	123021
2a1jA	63	53.81	a.60.2.5	126000
1alu	186	61.31		
7taa	478	73.37		
1yz7A	188	75.95		
1udxA	416	78.17	b.117.1.1,c.37.1.8,d.242.1.1	99228,99229,99230
1ez0A	510	80.37	c.82.1.1	35385
1zvdA	380	81.39		
1mp4A	292	81.46	c.68.1.6	79376
2bsxA	253	86.48	c.56.2.1	129128