# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vl4A	447	9.513	d.283.1.1	108718
1vpbA	451	9.741	d.283.1.1	113950
2ze0A	555	10.35		
1g0rA	293	13.23	c.68.1.6	34532
2ii1A	301	17.85		
1mc3A	296	18.88	c.68.1.6	78943
1ji2A	585	31.44	b.1.18.2,b.71.1.1,c.1.8.1	71672,71673,71674
2i8aA	252	34.97		
1yexA	186	35.50	c.47.1.10	123021
1xg7A	250	37.17	a.96.1.6	115281
1j5yA	187	38.81	a.4.5.1,d.94.2.1	71592,71593
2a1jA	63	41.38	a.60.2.5	126000
1wzlA	585	43.46	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
2gffA	106	47.14		
2vglA	621	49.12		
1alu	186	49.54		
1udxA	416	56.23	b.117.1.1,c.37.1.8,d.242.1.1	99228,99229,99230
1sviA	195	57.70	c.37.1.8	106048
7taa	478	60.12		
2bmxA	195	63.76	c.47.1.10	128817
1yz7A	188	69.99		
1jf8A	131	69.99	c.44.1.1	66621
2hrdA	253	71.69		
1focA	132	72.39	a.3.1.1	15812
1pmi	440	79.09		
3cnwA	148	80.82		
1puzA	82	81.26	a.218.1.1	104320
2jf2A	264	87.11	b.81.1.1	138289
1amy	403	88.39		
2q00A	129	89.15