# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vpbA	451	5.292	d.283.1.1	113950
1vl4A	447	7.512	d.283.1.1	108718
1oixA	191	12.40	c.37.1.8	118710
2ii1A	301	13.92		
2hmaA	376	15.69		
1xg7A	250	16.75	a.96.1.6	115281
1g0rA	293	16.86	c.68.1.6	34532
1yexA	186	17.35	c.47.1.10	123021
2i8aA	252	22.81		
2a1jA	63	27.96	a.60.2.5	126000
1mc3A	296	29.62	c.68.1.6	78943
1j5yA	187	30.02	a.4.5.1,d.94.2.1	71592,71593
2f9lA	199	36.15	c.37.1.8	133166
1xvwA	160	36.42	c.47.1.10	122387
2otnA	308	38.41		
2bsxA	253	41.44	c.56.2.1	129128
2p52A	196	41.69		
1j75A	67	43.44	a.4.5.19	62673
1qg4A	216	44.31	c.37.1.8	32035
2hrdA	253	44.41		
1byuA	216	44.60	c.37.1.8	32032
1yz7A	188	50.52		
1w36C	1122	52.70	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
2c8eE	211	54.17		
2q00A	129	58.71		
2fn0A	437	58.84	d.161.1.1	133799
2b4aA	138	64.34	c.23.1.1	127817
1vgmA	378	64.84		
2pexA	153	68.52		
1yzqA	170	70.97	c.37.1.8	124286
2ocgA	254	73.44		
3rabA	169	75.63	c.37.1.8	32018
1sviA	195	75.68	c.37.1.8	106048
1puzA	82	76.94	a.218.1.1	104320
1t9iA	163	78.45	d.95.2.1	112360
1z1dA	103	79.67	a.4.5.16	124351
1h1yA	228	80.98	c.1.2.2	76506
1nd7A	374	83.53	d.148.1.1	91817
1fcdC	174	85.58	a.3.1.4,a.3.1.4	15966,15967
1gnuA	117	87.69	d.15.1.3	65403
1iugA	352	89.00	c.67.1.3	90699
1qgpA	77	89.48	a.4.5.19	16158
2bmxA	195	89.93	c.47.1.10	128817