# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1g0rA	293	10.56	c.68.1.6	34532
2ii1A	301	12.45		
1ji2A	585	16.72	b.1.18.2,b.71.1.1,c.1.8.1	71672,71673,71674
1mc3A	296	16.74	c.68.1.6	78943
1vl4A	447	16.78	d.283.1.1	108718
1vpbA	451	17.86	d.283.1.1	113950
1j5yA	187	20.20	a.4.5.1,d.94.2.1	71592,71593
1wzlA	585	20.52	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1pmi	440	24.31		
1alu	186	27.79		
1oixA	191	31.65	c.37.1.8	118710
2f9lA	199	34.12	c.37.1.8	133166
1jykA	254	35.19	c.68.1.13	67458
2ze0A	555	37.56		
1amy	403	46.37		
1yexA	186	55.26	c.47.1.10	123021
1h5rA	293	57.15	c.68.1.6	65623
2bmxA	195	57.29	c.47.1.10	128817
1zvdA	380	58.37		
1nd7A	374	58.40	d.148.1.1	91817
2gffA	106	68.02		
1udxA	416	68.86	b.117.1.1,c.37.1.8,d.242.1.1	99228,99229,99230
3c5cA	187	69.66		
2a1jA	63	71.12	a.60.2.5	126000
7taa	478	75.34		
1j75A	67	77.97	a.4.5.19	62673
1sviA	195	78.27	c.37.1.8	106048
2i8aA	252	78.65		
1z08A	170	85.59	c.37.1.8	124303
1wkbA	810	87.22		
2os5A	119	87.81		
2ffqA	171	88.46