# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1ji2A	585	10.79	b.1.18.2,b.71.1.1,c.1.8.1	71672,71673,71674
2ii1A	301	12.01		
1vl4A	447	13.54	d.283.1.1	108718
1wzlA	585	17.55	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1alu	186	23.94		
1pmi	440	26.45		
1j5yA	187	29.66	a.4.5.1,d.94.2.1	71592,71593
1vpbA	451	31.58	d.283.1.1	113950
2ze0A	555	32.31		
1amy	403	37.97		
7taa	478	39.61		
2a1jA	63	56.70	a.60.2.5	126000
1g0rA	293	60.08	c.68.1.6	34532
1sviA	195	60.28	c.37.1.8	106048
1yexA	186	63.49	c.47.1.10	123021
1mc3A	296	65.50	c.68.1.6	78943
1yz7A	188	66.84		
2bmxA	195	66.92	c.47.1.10	128817
1zvdA	380	67.88		
2gffA	106	68.00		
2p52A	196	77.33		
2ihdA	155	84.18		
1oixA	191	84.62	c.37.1.8	118710
1udxA	416	86.67	b.117.1.1,c.37.1.8,d.242.1.1	99228,99229,99230