# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	12.75		
1ji2A	585	17.59	b.1.18.2,b.71.1.1,c.1.8.1	71672,71673,71674
1vl4A	447	19.13	d.283.1.1	108718
1g0rA	293	20.03	c.68.1.6	34532
2ze0A	555	22.21		
1mc3A	296	23.81	c.68.1.6	78943
1alu	186	25.83		
1vpbA	451	32.39	d.283.1.1	113950
1wzlA	585	32.47	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1j5yA	187	35.80	a.4.5.1,d.94.2.1	71592,71593
1pmi	440	37.40		
1jykA	254	40.14	c.68.1.13	67458
7taa	478	40.75		
1amy	403	45.32		
2gffA	106	50.20		
1oixA	191	51.59	c.37.1.8	118710
2f9lA	199	57.95	c.37.1.8	133166
1yexA	186	60.07	c.47.1.10	123021
1wkbA	810	63.55		
1nd7A	374	66.30	d.148.1.1	91817
1h5rA	293	66.50	c.68.1.6	65623
2a1jA	63	68.10	a.60.2.5	126000
2bmxA	195	70.05	c.47.1.10	128817
1sviA	195	71.32	c.37.1.8	106048
2e0tA	151	77.64		
1udxA	416	88.33	b.117.1.1,c.37.1.8,d.242.1.1	99228,99229,99230
1xvwA	160	88.96	c.47.1.10	122387