# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	5.465		
1fvpA	231	15.46	c.1.16.2	29556
1zvdA	380	16.71		
2qk1A	249	22.77		
1sviA	195	23.84	c.37.1.8	106048
1xg7A	250	25.16	a.96.1.6	115281
2a1jA	63	25.45	a.60.2.5	126000
1vl4A	447	26.18	d.283.1.1	108718
1lghB	45	27.54	f.3.1.1	43734
1j5yA	187	27.68	a.4.5.1,d.94.2.1	71592,71593
1vpbA	451	28.96	d.283.1.1	113950
1z1dA	103	33.35	a.4.5.16	124351
2os5A	119	34.45		
2guyA	478	35.42	b.71.1.1,c.1.8.1	135754,135755
1wzlA	585	36.75	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1alu	186	37.79		
1nfp	228	39.15		
1w36C	1122	39.28	c.37.1.19,c.37.1.19,c.52.1.25	114125,114126,114127
3b8mA	280	40.93		
1udxA	416	41.75	b.117.1.1,c.37.1.8,d.242.1.1	99228,99229,99230
2vglA	621	46.53		
1ji2A	585	46.71	b.1.18.2,b.71.1.1,c.1.8.1	71672,71673,71674
2ie4A	589	48.76	a.118.1.2	137291
1mc3A	296	49.31	c.68.1.6	78943
1nkzB	41	49.38	f.3.1.1	80612
1x24A	180	51.82		
1focA	132	52.30	a.3.1.1	15812
2ocgA	254	53.25		
3bq3A	270	53.61		
1g0rA	293	60.07	c.68.1.6	34532
1yz7A	188	64.17		
2ihdA	155	64.82		
2i8aA	252	67.09		
1jykA	254	69.70	c.68.1.13	67458
1spvA	184	70.95	c.50.1.2	98957
1pmi	440	80.85		
1rz2A	254	81.17	b.100.1.1	105130
1ijdB	42	82.70	f.3.1.1	66156
2or4A	709	85.77	a.48.2.1,c.8.4.1,c.56.5.5	139258,139259,139260
1xqoA	256	87.45	a.96.1.6	115853