# List of top-scoring protein chains for t2k-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1vpbA	451	6.492	d.283.1.1	113950
2ii1A	301	9.166		
1wzlA	585	11.13	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1g0rA	293	13.24	c.68.1.6	34532
1vl4A	447	14.39	d.283.1.1	108718
1mc3A	296	17.59	c.68.1.6	78943
1ji2A	585	23.06	b.1.18.2,b.71.1.1,c.1.8.1	71672,71673,71674
1h5rA	293	33.82	c.68.1.6	65623
1yexA	186	34.24	c.47.1.10	123021
2i8aA	252	42.89		
1jykA	254	43.03	c.68.1.13	67458
7taa	478	44.17		
1oixA	191	46.52	c.37.1.8	118710
1vgmA	378	47.59		
2bmxA	195	47.67	c.47.1.10	128817
1alu	186	47.83		
2ze0A	555	58.56		
1xg7A	250	63.87	a.96.1.6	115281
2hrdA	253	71.64		
1dmr	823	74.65		
3b8mA	280	79.02		
1udxA	416	82.56	b.117.1.1,c.37.1.8,d.242.1.1	99228,99229,99230
1j5yA	187	86.88	a.4.5.1,d.94.2.1	71592,71593
1mp4A	292	87.14	c.68.1.6	79376