# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1amy 403 0.8062 1hr6A 475 1.595 d.185.1.1,d.185.1.1 61164,61165 2ii1A 301 1.903 1y42X 392 5.291 1f07A 321 5.710 c.1.16.3 59560 1o7eA 276 8.855 e.3.1.1 92622 1z63A 500 9.403 c.37.1.19,c.37.1.19 124502,124503 1ve5A 311 10.14 c.79.1.1 120013 2ie4A 589 10.77 a.118.1.2 137291 1vpbA 451 11.28 d.283.1.1 113950 1x1iA 752 11.41 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 2dcfA 392 12.38 2f9lA 199 13.76 c.37.1.8 133166 1g5hA 454 14.85 c.51.1.1,d.104.1.1 60270,60271 2iwbA 246 15.47 1whsA 255 16.82 c.69.1.5 34649 2e3jA 356 18.94 1h7xA 1025 19.21 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 1dmr 823 21.64 2fv7A 331 22.92 c.72.1.1 134197 1hzoA 271 23.07 e.3.1.1 71092 1j5yA 187 23.63 a.4.5.1,d.94.2.1 71592,71593 1wzlA 585 25.44 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1jdc 429 25.66 1g5gA 481 26.20 f.12.1.1,h.3.2.1 65155,65156 1pguA 615 27.11 b.69.4.1,b.69.4.1 88069,88070 1h1lA 481 28.40 c.92.2.3 70851 1erjA 393 28.44 b.69.4.1 27660 2f4lA 297 28.80 b.23.3.1 132927 1ppjB 439 28.92 d.185.1.1,d.185.1.1 104254,104255 1w2fA 276 29.39 d.143.1.3 109125 1k3pA 426 30.44 a.103.1.1 77237 1yexA 186 30.72 c.47.1.10 123021 1sc3A 178 31.50 c.17.1.1 105416 2i8aA 252 32.05 3pcgM 238 33.01 b.3.6.1 22742 1ji2A 585 33.17 b.1.18.2,b.71.1.1,c.1.8.1 71672,71673,71674 1xvwA 160 33.51 c.47.1.10 122387 1alu 186 33.56 2ocgA 254 33.77 1qba 858 33.84 1gcyA 527 34.99 b.71.1.1,c.1.8.1 27788,28775 1p5dX 463 37.02 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 2fp8A 322 37.41 1ys4A 354 37.79 1bg6 359 37.89 1mp4A 292 38.51 c.68.1.6 79376 1jjfA 268 40.03 c.69.1.2 66765 2fp4B 395 40.19 c.23.4.1,d.142.1.4 133897,133898 1p22A 435 41.36 a.158.1.1,b.69.4.1 87715,87716 3b8mA 280 43.03 1ht6A 405 43.45 b.71.1.1,c.1.8.1 83629,83630 2vccA 891 45.09 2bs3C 256 45.48 1gr0A 367 46.54 c.2.1.3,d.81.1.3 70379,70380 1g0rA 293 46.84 c.68.1.6 34532 1eu1A 780 49.80 b.52.2.2,c.81.1.1 26903,35311 2hrdA 253 50.04 2c92A 160 51.35 1t90A 486 51.42 2r7dA 469 52.30 1bkcE 256 52.89 d.92.1.10 40333 2ia2A 265 54.26 1fxoA 293 54.53 c.68.1.6 34524 1nd4A 264 56.00 d.144.1.6 91815 1rz2A 254 56.89 b.100.1.1 105130 2sakA 121 58.15 d.15.5.1 37711 1j32A 388 58.24 c.67.1.1 77067 1jf8A 131 58.84 c.44.1.1 66621 1j09A 468 58.88 a.97.1.1,c.26.1.1 77025,77026 1xg7A 250 63.12 a.96.1.6 115281 1b4vA 504 63.63 c.3.1.2,d.16.1.1 30334,37865 1han 297 64.47 1avaA 403 64.63 b.71.1.1,c.1.8.1 27797,28784 2qomA 285 64.89 2q4eA 362 65.30 1f48A 589 65.81 c.37.1.10,c.37.1.10 32280,32281 2bmxA 195 66.78 c.47.1.10 128817 2fnuA 375 66.92 c.67.1.4 133831 1vi6A 208 68.19 c.23.15.1 100736 2vduB 450 69.35 1mioA 534 69.53 c.92.2.3 35601 2bhuA 602 71.29 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 2b4aA 138 72.35 c.23.1.1 127817 1mc3A 296 72.88 c.68.1.6 78943 1jx2B 315 72.98 c.37.1.8 67404 1y3nA 490 73.54 c.94.1.1 122597 1glaG 501 74.67 c.55.1.4,c.55.1.4 33507,33508 2p74A 263 75.86 1sbpA 310 75.86 c.94.1.1 35760 2bcjB 340 77.01 b.69.4.1 128289 1j9lA 247 78.86 c.106.1.1 62762 2rgmA 481 80.19 2gffA 106 82.79 2ajfA 597 83.14 d.92.1.5 126882 1ed8A 449 85.00 c.76.1.1 34988 1n4qB 377 85.12 a.102.4.3 91636 2oitA 434 85.39 2pbeA 294 86.66 1lf6A 684 89.07 a.102.1.5,b.30.5.5 77918,77919 1qh8A 478 89.17 c.92.2.3 35633