# List of top-scoring protein chains for t2k-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	8.736		
1mc3A	296	40.55	c.68.1.6	78943
1ji2A	585	46.17	b.1.18.2,b.71.1.1,c.1.8.1	71672,71673,71674
1g0rA	293	46.18	c.68.1.6	34532
2ze0A	555	48.64		
1oixA	191	49.17	c.37.1.8	118710
1vpbA	451	49.20	d.283.1.1	113950
1yexA	186	49.42	c.47.1.10	123021
1vl4A	447	53.74	d.283.1.1	108718
1wzlA	585	55.91	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1udxA	416	65.52	b.117.1.1,c.37.1.8,d.242.1.1	99228,99229,99230
1alu	186	67.80		
2bmxA	195	73.68	c.47.1.10	128817
1k0eA	453	74.28	d.161.1.1	67938
2f9lA	199	83.33	c.37.1.8	133166
1dmr	823	85.56		
2i8aA	252	89.23		
2a1jA	63	89.90	a.60.2.5	126000