# List of top-scoring protein chains for t2k-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	7.331		
1j5yA	187	16.50	a.4.5.1,d.94.2.1	71592,71593
1t9iA	163	16.73	d.95.2.1	112360
1vpbA	451	20.12	d.283.1.1	113950
2ze0A	555	21.02		
1vl4A	447	23.51	d.283.1.1	108718
1xg7A	250	26.04	a.96.1.6	115281
1amy	403	26.45		
1g0rA	293	27.35	c.68.1.6	34532
1oixA	191	29.18	c.37.1.8	118710
7taa	478	31.74		
1ji2A	585	32.45	b.1.18.2,b.71.1.1,c.1.8.1	71672,71673,71674
1mc3A	296	33.03	c.68.1.6	78943
2f9lA	199	38.56	c.37.1.8	133166
2gffA	106	40.53		
1alu	186	41.40		
1wzlA	585	45.31	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1ej0A	180	46.86	c.66.1.2	34179
3b8mA	280	59.68		
2a1jA	63	67.74	a.60.2.5	126000
1yexA	186	70.25	c.47.1.10	123021
2i8aA	252	83.06		
1sviA	195	84.03	c.37.1.8	106048
3c5cA	187	86.64		
1pmi	440	87.07		
1z1dA	103	87.96	a.4.5.16	124351
1jf8A	131	88.07	c.44.1.1	66621