# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	4.710		
1vpbA	451	5.311	d.283.1.1	113950
1vl4A	447	9.721	d.283.1.1	108718
2ze0A	555	12.93		
1mc3A	296	16.87	c.68.1.6	78943
1t9iA	163	20.93	d.95.2.1	112360
1xg7A	250	23.68	a.96.1.6	115281
1ji2A	585	24.22	b.1.18.2,b.71.1.1,c.1.8.1	71672,71673,71674
1g0rA	293	24.53	c.68.1.6	34532
1oixA	191	25.54	c.37.1.8	118710
1wzlA	585	26.87	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1j5yA	187	33.99	a.4.5.1,d.94.2.1	71592,71593
2a1jA	63	42.31	a.60.2.5	126000
2vglA	621	45.71		
1yexA	186	47.68	c.47.1.10	123021
1amy	403	52.21		
1j75A	67	54.13	a.4.5.19	62673
2p52A	196	54.26		
2q00A	129	54.52		
1ez0A	510	58.71	c.82.1.1	35385
3b8mA	280	60.79		
1vgmA	378	62.65		
1z08A	170	65.86	c.37.1.8	124303
2i8aA	252	65.97		
7taa	478	68.84		
1alu	186	69.25		
1h5rA	293	71.01	c.68.1.6	65623
1xvwA	160	73.44	c.47.1.10	122387
2f9lA	199	79.05	c.37.1.8	133166
1pmi	440	81.28		
1ej0A	180	82.97	c.66.1.2	34179
2bmxA	195	84.71	c.47.1.10	128817
1z1dA	103	85.64	a.4.5.16	124351