# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	3.447		
1g0rA	293	9.907	c.68.1.6	34532
1vpbA	451	14.46	d.283.1.1	113950
1vl4A	447	16.00	d.283.1.1	108718
1t9iA	163	18.53	d.95.2.1	112360
2ze0A	555	19.18		
1oixA	191	23.76	c.37.1.8	118710
2f9lA	199	24.46	c.37.1.8	133166
1mc3A	296	24.80	c.68.1.6	78943
1ji2A	585	28.35	b.1.18.2,b.71.1.1,c.1.8.1	71672,71673,71674
1j5yA	187	29.81	a.4.5.1,d.94.2.1	71592,71593
7taa	478	37.01		
1xg7A	250	37.54	a.96.1.6	115281
1fvpA	231	39.38	c.1.16.2	29556
2a1jA	63	40.03	a.60.2.5	126000
1yexA	186	44.55	c.47.1.10	123021
2gffA	106	47.10		
3c5cA	187	48.95		
1jf8A	131	54.40	c.44.1.1	66621
3b8mA	280	58.90		
1sviA	195	59.47	c.37.1.8	106048
1amy	403	60.95		
1pmi	440	65.54		
1alu	186	66.24		
2bmxA	195	67.46	c.47.1.10	128817
1udxA	416	69.98	b.117.1.1,c.37.1.8,d.242.1.1	99228,99229,99230
1wzlA	585	72.87	b.1.18.2,b.71.1.1,c.1.8.1	121513,121514,121515
1qbkB	890	73.74	a.118.1.1	19127
2e0tA	151	81.06		
1vgmA	378	81.68		
1oivA	191	82.27	c.37.1.8	93076
2f4lA	297	82.88	b.23.3.1	132927
1oyiA	82	84.75	a.4.5.19	93729