# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1xg7A	250	16.67	a.96.1.6	115281
1y42X	392	28.30		
3b8mA	280	33.16		
1ej0A	180	40.44	c.66.1.2	34179
2c4wA	176	44.37		
2ihdA	155	49.49		
3bq3A	270	50.91		
1zvdA	380	55.05		
1vl4A	447	55.80	d.283.1.1	108718
1lghB	45	58.86	f.3.1.1	43734
2avnA	260	59.31	c.66.1.41	127380
1vpbA	451	65.67	d.283.1.1	113950
1t08A	519	66.27	a.118.1.1	112190
1jykA	254	69.05	c.68.1.13	67458
1alu	186	70.13		
1focA	132	72.23	a.3.1.1	15812
1x24A	180	75.34		
1j5yA	187	86.48	a.4.5.1,d.94.2.1	71592,71593
2bfgA	503	88.40	b.71.1.2,c.1.8.3	128423,128424