# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1t9iA	163	5.854	d.95.2.1	112360
2c4wA	176	9.773		
1xg7A	250	10.38	a.96.1.6	115281
1y42X	392	12.20		
1vpbA	451	18.52	d.283.1.1	113950
1vl4A	447	20.84	d.283.1.1	108718
2ii1A	301	23.76		
1xqoA	256	24.88	a.96.1.6	115853
2ocgA	254	25.23		
1mc3A	296	29.29	c.68.1.6	78943
1g6oA	330	30.70	c.37.1.11	32430
2guyA	478	35.87	b.71.1.1,c.1.8.1	135754,135755
1aj2	282	38.08		
1b1eA	123	52.25	d.5.1.1	37300
1ej0A	180	52.99	c.66.1.2	34179
1lghB	45	59.27	f.3.1.1	43734
3bq3A	270	61.09		
1alu	186	61.17		
3b8mA	280	65.74		
1amy	403	71.04		
1b0xA	94	71.29	a.60.1.2	17933
1zvdA	380	72.15		
1k2fA	190	73.80	b.8.1.2	68054
1t08A	519	75.90	a.118.1.1	112190
1r1hA	696	76.29	d.92.1.4	104756
2vduE	254	80.25		
2ze0A	555	81.32		
1g0rA	293	81.53	c.68.1.6	34532
1ji2A	585	83.02	b.1.18.2,b.71.1.1,c.1.8.1	71672,71673,71674
1b1jA	123	83.47	d.5.1.1	37298
1yasA	257	86.43	c.69.1.20	34801
1w2fA	276	88.19	d.143.1.3	109125