# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1jkxA 212 4.513 c.65.1.1 66813 1m41A 380 4.630 c.1.16.4 78595 3bojA 213 6.178 2gsaA 432 7.675 c.67.1.4 34446 2gar 212 9.306 2hp1A 432 11.43 2hmaA 376 11.92 2pnwA 380 12.38 1jr2A 286 14.06 c.113.1.1 67111 1cp2A 269 14.10 c.37.1.10 32269 1mp8A 281 14.30 d.144.1.7 91384 1v7rA 186 14.58 c.51.4.1 100482 1lj1A 571 17.57 a.138.1.3,c.3.1.4,d.168.1.1 78023,78024,78025 1nqkA 381 17.76 c.1.16.4 92050 1meoA 209 17.99 c.65.1.1 79035 1mejA 223 18.72 c.65.1.1 79029 2p90A 319 19.61 1yacA 208 20.29 c.33.1.3 31757 1m64A 571 22.39 a.138.1.3,c.3.1.4,d.168.1.1 78683,78684,78685 1xpmA 396 22.39 c.95.1.2,c.95.1.2 115759,115760 1rz2A 254 22.80 b.100.1.1 105130 2q4oA 215 24.07 c.129.1.1 139872 1jcjA 260 24.53 c.1.10.1 66499 1wu7A 434 25.15 c.51.1.1,d.104.1.1 121275,121276 2cy8A 453 26.26 2iyaA 424 26.79 3boeA 210 28.94 2b81A 323 30.58 1yioA 208 32.24 a.4.6.2,c.23.1.1 123326,123327 1q79A 514 32.62 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 2p3eA 420 33.28 1fmtA 314 33.34 b.46.1.1,c.65.1.1 25758,34174 1fa0B 537 35.61 d.58.16.1,a.160.1.1,d.218.1.3 39336,75839,75840 1kssA 571 37.47 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1necA 216 38.01 d.90.1.1 40249 1p1xA 260 39.22 c.1.10.1 104060 2bpqA 373 39.36 1wz9A 375 39.71 1xpkC 388 41.10 c.95.1.2,c.95.1.2 115747,115748 2elcA 329 42.09 1j3mA 129 43.32 d.129.7.1 103836 1qr0A 228 43.61 d.150.1.1,d.150.1.1 59038,59039 2ej9A 237 43.78 1m93B 245 44.44 1njgA 250 45.22 c.37.1.20 85785 1khdA 345 46.40 a.46.2.1,c.27.1.1 77400,77401 1oj6A 151 48.48 a.1.1.2 93088 1jpaA 312 49.00 d.144.1.7 67011 1vicA 262 50.11 c.68.1.13 100756 2bw0A 329 50.16 b.46.1.1,c.65.1.1 129303,129304 1f0kA 364 50.68 c.87.1.2 35465 1exbA 332 54.12 c.1.7.1 28666 1u00A 227 54.75 a.8.4.1,b.130.1.1 112900,112901 1ppjB 439 55.73 d.185.1.1,d.185.1.1 104254,104255 1biaA 321 56.08 a.4.5.1,b.34.1.1,d.104.1.2 16083,24447,40787 3c2qA 345 56.18 1e4eA 343 56.88 c.30.1.2,d.142.1.1 59221,59222 1ee4A 423 58.31 a.118.1.1 19128 2carA 196 60.09 c.51.4.1 130161 3c37A 253 60.35 2qytA 317 61.45 2h9aB 310 63.54 2bvaA 292 67.79 1in4A 334 68.06 a.4.5.11,c.37.1.20 62597,62598 1h5qA 265 68.12 c.2.1.2 60643 1e79G 272 69.78 c.49.2.1 33158 2e7uA 424 70.25 1ialA 453 70.38 a.118.1.1 19116 1evyA 366 70.42 a.100.1.6,c.2.1.6 18811,30215 1h8eG 272 71.03 c.49.2.1 60756 1w8gA 234 72.05 3co8A 380 72.38 1uc8A 280 73.34 c.30.1.6,d.142.1.7 99165,99166 1fmk 452 73.43 2j66A 428 76.56 1zowA 313 77.03 1q6oA 216 77.88 c.1.2.3 95986 1qjdA 571 79.19 a.138.1.3,c.3.1.4,d.168.1.1 19695,30432,42315 1vfsA 386 79.20 b.49.2.2,c.1.6.1 108584,108585 1xfcA 384 79.65 1feuA 206 79.90 b.53.1.1 59801 1s3iA 310 83.66 b.46.1.1,c.65.1.1 98435,98436 2ywrA 216 84.15 2bneA 241 84.24 c.73.1.3 128824 1tvzA 388 85.91 c.95.1.2,c.95.1.2 107367,107368 1gtrA 553 86.22 b.53.1.2,c.26.1.1 26939,31578 1r8sE 203 87.68 a.118.3.1 97248 1atnA 373 88.09 c.55.1.1,c.55.1.1 33437,33438 1zc6A 305 89.22 c.55.1.5,c.55.1.5 124888,124889