Best Alignments for T0405

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2ii1A	8.4527e+00	2ii1A/T0405-2ii1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1xg7A	2.2110e+01	1xg7A/T0405-1xg7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.96.1.6
2f4lA	2.7048e+01	2f4lA/T0405-2f4lA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.23.3.1
1bg6A	3.0851e+01	1bg6A/T0405-1bg6A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.100.1.5 c.2.1.6
1vl4A	3.4405e+01	1vl4A/T0405-1vl4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.283.1.1
1yzyA	3.6206e+01	1yzyA/T0405-1yzyA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.146.1.1
1fvuA	3.8844e+01	1fvuA/T0405-1fvuA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.169.1.1
1vpbA	4.3282e+01	1vpbA/T0405-1vpbA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.283.1.1
1j34A	4.3682e+01	1j34A/T0405-1j34A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.169.1.1
1v04A	4.5393e+01	1v04A/T0405-1v04A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.68.6.2
1v7pB	5.3507e+01	1v7pB/T0405-1v7pB-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.169.1.1
2oa5A	5.4967e+01	2oa5A/T0405-2oa5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2g9wA	5.5227e+01	2g9wA/T0405-2g9wA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2sasA	6.0136e+01	2sasA/T0405-2sasA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
2f4eA	6.1018e+01	2f4eA/T0405-2f4eA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2yquA	6.8906e+01	2yquA/T0405-2yquA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1lu4A	7.7747e+01	1lu4A/T0405-1lu4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.47.1.10
1mqsA	7.8015e+01	1mqsA/T0405-1mqsA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1alvA	8.1941e+01	1alvA/T0405-1alvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.8
1azsC	8.6539e+01	1azsC/T0405-1azsC-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.66.1.1 c.37.1.8

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001