# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	5.200		
1v04A	355	7.261	b.68.6.2	100240
1vpbA	451	23.01	d.283.1.1	113950
2f4lA	297	23.90	b.23.3.1	132927
1vl4A	447	24.99	d.283.1.1	108718
1xg7A	250	25.52	a.96.1.6	115281
2g9wA	138	27.49		
1yzyA	413	27.59	c.146.1.1	124292
1bg6A	359	28.10	a.100.1.5,c.2.1.6	18810,30214
1fvuA	133	29.76	d.169.1.1	42345
1j34A	129	30.07	d.169.1.1	84048
2sasA	185	36.73	a.39.1.5	17258
1dytA	133	46.83	d.5.1.1	37288
1v7pB	128	49.21	d.169.1.1	108407
2fz4A	237	49.60	c.37.1.19	134419
2f4eA	180	49.86		
1alvA	173	58.66	a.39.1.8	17370
1azsC	388	63.30	a.66.1.1,c.37.1.8	18203,32086
1fp3A	402	63.97	a.102.1.3	18842
1lc0A	294	69.54	c.2.1.3,d.81.1.4	73823,73824
1f9aA	168	69.84	c.26.1.3	31602
2pkhA	148	69.94		
1lu4A	136	73.79	c.47.1.10	91124
1d8wA	426	76.37	c.1.15.2	29394
1v7pA	134	80.75	d.169.1.1	108406
1hc7A	477	85.24	c.51.1.1,d.104.1.1,d.68.5.1	60938,60939,60940
1t1vA	93	86.75	c.47.1.14	106278