# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	4.023		
1yzyA	413	10.80	c.146.1.1	124292
1v04A	355	11.76	b.68.6.2	100240
1bg6A	359	13.48	a.100.1.5,c.2.1.6	18810,30214
1xg7A	250	15.89	a.96.1.6	115281
2f4lA	297	16.12	b.23.3.1	132927
1fvuA	133	19.25	d.169.1.1	42345
1vl4A	447	19.66	d.283.1.1	108718
2yquA	455	24.68		
1j34A	129	25.18	d.169.1.1	84048
1vpbA	451	30.19	d.283.1.1	113950
3chvA	284	31.58		
2sasA	185	32.32	a.39.1.5	17258
1v7pB	128	33.13	d.169.1.1	108407
2pkhA	148	34.83		
2g9wA	138	35.11		
1lu4A	136	47.18	c.47.1.10	91124
1azsC	388	48.74	a.66.1.1,c.37.1.8	18203,32086
3b8zA	217	50.33		
1z08A	170	53.24	c.37.1.8	124303
1f9aA	168	58.73	c.26.1.3	31602
1hr6A	475	67.92	d.185.1.1,d.185.1.1	61164,61165
1v7pA	134	67.94	d.169.1.1	108406
1ab8A	220	69.87	d.58.29.1	39414
2a5jA	191	70.27	c.37.1.8	126175
2f4eA	180	74.04		
2h1qA	270	79.49		
2yxhA	116	89.72		
1gz2A	142	89.81	d.169.1.1	83392