# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	1.514		
1xg7A	250	4.570	a.96.1.6	115281
1vl4A	447	4.633	d.283.1.1	108718
2f4lA	297	5.040	b.23.3.1	132927
1bg6A	359	6.080	a.100.1.5,c.2.1.6	18810,30214
2yquA	455	7.279		
1yzyA	413	9.814	c.146.1.1	124292
2sasA	185	12.19	a.39.1.5	17258
1vpbA	451	15.66	d.283.1.1	113950
3chvA	284	16.19		
1z15A	344	21.17		
3b8zA	217	21.48		
1usgA	346	22.97	c.93.1.1	99864
1alvA	173	24.38	a.39.1.8	17370
2dpxA	174	30.20		
2fu5C	183	30.56	c.37.1.8	134104
2g9wA	138	32.19		
1j34A	129	38.48	d.169.1.1	84048
1lu4A	136	38.98	c.47.1.10	91124
1ky3A	182	39.71	c.37.1.8	73193
1azsC	388	39.95	a.66.1.1,c.37.1.8	18203,32086
1fvuA	133	40.87	d.169.1.1	42345
1q77A	138	43.28	c.26.2.4	96023
2f2eA	146	43.62	a.4.5.69	132808
1v7pB	128	43.90	d.169.1.1	108407
2biqA	219	45.65		
1xovA	326	53.11	b.34.11.4,c.56.5.6	122206,122207
1zud1	251	54.22		
1lc0A	294	55.75	c.2.1.3,d.81.1.4	73823,73824
2g7uA	257	56.26		
1t1vA	93	60.25	c.47.1.14	106278
1f9aA	168	60.30	c.26.1.3	31602
2idlA	117	62.06		
1mkmA	249	67.17	a.4.5.33,d.110.2.2	79242,79243
1z08A	170	68.22	c.37.1.8	124303
2gjsA	176	69.29	c.37.1.8	135287
1yacA	208	71.88	c.33.1.3	31757
1xv2A	237	71.90	d.290.1.1	116076
1xvwA	160	72.80	c.47.1.10	122387
1ab8A	220	73.45	d.58.29.1	39414
1jwqA	179	75.91	c.56.5.6	90921
2cf8L	28	80.82		
2hxsA	178	80.91		
1h8dL	29	82.98	b.47.1.2	60737
1yb0A	159	83.28	d.118.1.1	122865
1v04A	355	84.70	b.68.6.2	100240
3grs	478	84.80		
1zx5A	300	86.62	b.82.1.3	125763
2bvrL	36	87.16		
1bu8A	452	88.60	b.12.1.2,c.69.1.19	23647,34795