# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	2.823		
1yzyA	413	7.081	c.146.1.1	124292
1v04A	355	13.25	b.68.6.2	100240
1fvuA	133	13.79	d.169.1.1	42345
1j34A	129	13.82	d.169.1.1	84048
2f4lA	297	15.51	b.23.3.1	132927
1v7pB	128	16.99	d.169.1.1	108407
1vl4A	447	22.46	d.283.1.1	108718
2g9wA	138	24.70		
1lu4A	136	27.52	c.47.1.10	91124
1alvA	173	28.41	a.39.1.8	17370
1bg6A	359	29.78	a.100.1.5,c.2.1.6	18810,30214
2fz4A	237	33.07	c.37.1.19	134419
2f4eA	180	35.04		
1v7pA	134	46.76	d.169.1.1	108406
1wt9B	123	47.75	d.169.1.1	121255
2e8yA	718	48.36		
1j34B	123	48.99	d.169.1.1	84049
1xg7A	250	51.21	a.96.1.6	115281
2yxhA	116	51.53		
1vpbA	451	52.74	d.283.1.1	113950
2fu5C	183	55.23	c.37.1.8	134104
2sasA	185	56.27	a.39.1.5	17258
1z08A	170	56.86	c.37.1.8	124303
2dpxA	174	57.58		
1jwiB	125	58.10	d.169.1.1	67384
1gz2A	142	59.16	d.169.1.1	83392
2bptA	861	65.16	a.118.1.1	128951
1dytA	133	66.21	d.5.1.1	37288
2nytA	190	66.37		
2os5A	119	67.13		
1azsC	388	67.35	a.66.1.1,c.37.1.8	18203,32086
1hc7A	477	67.92	c.51.1.1,d.104.1.1,d.68.5.1	60938,60939,60940
1wmsA	177	68.54	c.37.1.8	109414
1ek0A	170	73.46	c.37.1.8	32076
1d8wA	426	74.76	c.1.15.2	29394
1r2qA	170	75.54	c.37.1.8	96874
2b1kA	168	76.51		
1jznA	135	76.83	d.169.1.1	84262
2pkhA	148	77.40		
1z0jA	170	78.92	c.37.1.8	124319
1z5yE	149	82.67	c.47.1.10	124498
1ig5A	75	82.76	a.39.1.1	62363
1eazA	125	83.32	b.55.1.1	70113
2biqA	219	87.07		
1f06A	320	89.32	c.2.1.3,d.81.1.3	59556,59557