# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	4.966		
1yzyA	413	7.729	c.146.1.1	124292
1vl4A	447	12.62	d.283.1.1	108718
2g9wA	138	17.85		
2f4lA	297	18.31	b.23.3.1	132927
1j34A	129	19.22	d.169.1.1	84048
1fvuA	133	19.40	d.169.1.1	42345
1bg6A	359	19.97	a.100.1.5,c.2.1.6	18810,30214
1v7pB	128	26.70	d.169.1.1	108407
2f4eA	180	28.39		
1lu4A	136	30.70	c.47.1.10	91124
1v04A	355	34.05	b.68.6.2	100240
1vpbA	451	46.90	d.283.1.1	113950
1alvA	173	47.07	a.39.1.8	17370
2fz4A	237	49.51	c.37.1.19	134419
1xg7A	250	52.21	a.96.1.6	115281
2biqA	219	53.10		
1azsC	388	54.13	a.66.1.1,c.37.1.8	18203,32086
2yxhA	116	55.17		
1j34B	123	64.90	d.169.1.1	84049
1wmsA	177	65.64	c.37.1.8	109414
2sasA	185	67.48	a.39.1.5	17258
1r2qA	170	68.36	c.37.1.8	96874
2os5A	119	70.07		
1dytA	133	70.39	d.5.1.1	37288
2a5jA	191	70.43	c.37.1.8	126175
1wt9B	123	71.81	d.169.1.1	121255
1usgA	346	71.88	c.93.1.1	99864
1t1vA	93	72.13	c.47.1.14	106278
1v7pA	134	72.69	d.169.1.1	108406
1f9aA	168	72.79	c.26.1.3	31602
1ek0A	170	78.44	c.37.1.8	32076
2bptA	861	87.72	a.118.1.1	128951
1ig5A	75	88.16	a.39.1.1	62363
2gf9A	189	88.59		
1z08A	170	89.06	c.37.1.8	124303
1z0jA	170	89.90	c.37.1.8	124319