# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	2.041		
1xg7A	250	3.661	a.96.1.6	115281
1zvdA	380	10.62		
1vl4A	447	14.49	d.283.1.1	108718
2f4lA	297	15.09	b.23.3.1	132927
2yquA	455	17.33		
1ywqA	200	18.28	d.90.1.1	124162
1gw5A	621	21.13	a.118.1.10	70629
1alvA	173	24.40	a.39.1.8	17370
2sasA	185	24.73	a.39.1.5	17258
1q77A	138	26.24	c.26.2.4	96023
1j34A	129	28.37	d.169.1.1	84048
2vglB	591	29.51		
1bg6A	359	29.69	a.100.1.5,c.2.1.6	18810,30214
1vpbA	451	29.81	d.283.1.1	113950
1fvuA	133	36.28	d.169.1.1	42345
1bgcA	174	36.86	a.26.1.1	16822
1v7pB	128	38.07	d.169.1.1	108407
2hqyA	305	41.63		
2yxhA	116	44.35		
2ra8A	362	47.10		
1hc7A	477	51.12	c.51.1.1,d.104.1.1,d.68.5.1	60938,60939,60940
2os5A	119	55.59		
2f4eA	180	56.19		
1t1vA	93	60.04	c.47.1.14	106278
3bq3A	270	61.67		
1tkeA	224	61.82	d.15.10.1,d.67.1.1	112470,112471
1v7pA	134	62.54	d.169.1.1	108406
2cs2A	134	74.83		
1u5hA	273	78.35	c.1.12.5	113037
3bomB	147	79.30		
1z00B	84	79.83	a.60.2.5	124295
2g9wA	138	80.67		
2bptA	861	84.46	a.118.1.1	128951
1ywuA	149	85.23	b.45.2.1	124164
1m0uA	249	88.28	a.45.1.1,c.47.1.5	78359,78360
1azsC	388	88.68	a.66.1.1,c.37.1.8	18203,32086