# List of top-scoring protein chains for t06-w0.5-1-n_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2ii1A	301	3.260		
1yzyA	413	9.919	c.146.1.1	124292
1v04A	355	11.49	b.68.6.2	100240
1fvuA	133	13.38	d.169.1.1	42345
1j34A	129	15.93	d.169.1.1	84048
1v7pB	128	17.19	d.169.1.1	108407
1vpbA	451	17.74	d.283.1.1	113950
2f4lA	297	20.31	b.23.3.1	132927
1vl4A	447	20.80	d.283.1.1	108718
1alvA	173	28.88	a.39.1.8	17370
1lu4A	136	29.63	c.47.1.10	91124
2fldA	165	35.84		
2dpxA	174	36.26		
1xg7A	250	39.43	a.96.1.6	115281
2g9wA	138	40.10		
2fu5C	183	42.48	c.37.1.8	134104
1gz2A	142	44.75	d.169.1.1	83392
2sasA	185	45.20	a.39.1.5	17258
1v7pA	134	46.50	d.169.1.1	108406
1bg6A	359	46.75	a.100.1.5,c.2.1.6	18810,30214
1j34B	123	52.79	d.169.1.1	84049
1wt9B	123	53.53	d.169.1.1	121255
1hc7A	477	55.93	c.51.1.1,d.104.1.1,d.68.5.1	60938,60939,60940
1azsC	388	59.63	a.66.1.1,c.37.1.8	18203,32086
1jwiB	125	62.25	d.169.1.1	67384
2f4eA	180	63.06		
2bptA	861	64.92	a.118.1.1	128951
1fp3A	402	66.21	a.102.1.3	18842
1jznA	135	66.30	d.169.1.1	84262
1v33A	366	69.97	d.264.1.1	100278
1dytA	133	70.49	d.5.1.1	37288
2os5A	119	71.08		
2aq6A	147	71.64	b.45.1.1	127156
1k0eA	453	72.37	d.161.1.1	67938
1z08A	170	72.58	c.37.1.8	124303
1st9A	143	79.09	c.47.1.10	98987
3c5cA	187	81.15		
2e8yA	718	82.49		
2f9sA	151	82.78	c.47.1.10	133168
1kb9A	431	84.82	d.185.1.1,d.185.1.1	77311,77312
2pkhA	148	86.74		
1r2qA	170	87.15	c.37.1.8	96874
1f9aA	168	88.28	c.26.1.3	31602
1d8wA	426	88.57	c.1.15.2	29394